miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 96501 0.66 0.93742
Target:  5'- cGCGGCggugUCGuCCGCCCAAcacaguGUGUucgcgucugcgggcgUGCACGc -3'
miRNA:   3'- -CGUCG----GGC-GGCGGGUU------UAUA---------------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 59443 0.66 0.935418
Target:  5'- -uGGCgUCGCUGCCCA---GUUGCAgGu -3'
miRNA:   3'- cgUCG-GGCGGCGGGUuuaUAACGUgC- -5'
21188 5' -54.3 NC_004778.3 + 32276 0.66 0.935418
Target:  5'- aGCAGCgCCaaCGCCCAGcaa-UGCACc -3'
miRNA:   3'- -CGUCG-GGcgGCGGGUUuauaACGUGc -5'
21188 5' -54.3 NC_004778.3 + 30818 0.66 0.935418
Target:  5'- gGCAGCUCGaCCGgCCGcuggaGGUGguagGCAUGa -3'
miRNA:   3'- -CGUCGGGC-GGCgGGU-----UUAUaa--CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 46167 0.66 0.930237
Target:  5'- cGCGGagCCGCCGCgCCGuucc--GCGCGu -3'
miRNA:   3'- -CGUCg-GGCGGCG-GGUuuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 65291 0.66 0.930237
Target:  5'- --cGCCCaCCGCgCCAAcguUUGCACa -3'
miRNA:   3'- cguCGGGcGGCG-GGUUuauAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 1729 0.66 0.930237
Target:  5'- aCAGUCCG-CGCUCAAAcacggUGUACGg -3'
miRNA:   3'- cGUCGGGCgGCGGGUUUaua--ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 86927 0.66 0.930237
Target:  5'- aGCAGCCCGuuGUCgg------GCACGc -3'
miRNA:   3'- -CGUCGGGCggCGGguuuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 100325 0.66 0.924804
Target:  5'- cGCGGCCguacaugGCaaCGCCCAcAAUAauuUUGCGCGg -3'
miRNA:   3'- -CGUCGGg------CG--GCGGGU-UUAU---AACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 37744 0.66 0.924804
Target:  5'- cGCAGCCCGCUuaUUucAAUGUuggcaauuUGCGCGu -3'
miRNA:   3'- -CGUCGGGCGGcgGGu-UUAUA--------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 25803 0.66 0.924804
Target:  5'- cGCuGcCCCGCCGCgCUAGugcUGUcUGCACu -3'
miRNA:   3'- -CGuC-GGGCGGCG-GGUUu--AUA-ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 40242 0.66 0.924804
Target:  5'- aUAGCCaGgCGCCCAAAaagacggGCGCGg -3'
miRNA:   3'- cGUCGGgCgGCGGGUUUauaa---CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 30732 0.66 0.924804
Target:  5'- cGCGGCCgGCUGCCauCGAAaGUU-CGCGu -3'
miRNA:   3'- -CGUCGGgCGGCGG--GUUUaUAAcGUGC- -5'
21188 5' -54.3 NC_004778.3 + 5257 0.66 0.924804
Target:  5'- uGCGGUuuGUucacaacaaCGCCCAGuacaccgUGCACGg -3'
miRNA:   3'- -CGUCGggCG---------GCGGGUUuaua---ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 5372 0.66 0.924804
Target:  5'- uCAGCgCGCCGUgCAuc---UGCACGa -3'
miRNA:   3'- cGUCGgGCGGCGgGUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 49055 0.66 0.919119
Target:  5'- aCAGCggGUCGCCCGGGUuagGCACu -3'
miRNA:   3'- cGUCGggCGGCGGGUUUAuaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 9886 0.66 0.919119
Target:  5'- cGCcGCCaaaguGCCGCCCGGGcgcggugUGCGCu -3'
miRNA:   3'- -CGuCGGg----CGGCGGGUUUaua----ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 59718 0.66 0.915587
Target:  5'- cGCAGCCagugcacaaacuuuuCGUCGCgCAGGUuggucUUGCACa -3'
miRNA:   3'- -CGUCGG---------------GCGGCGgGUUUAu----AACGUGc -5'
21188 5' -54.3 NC_004778.3 + 45538 0.66 0.913183
Target:  5'- cGCAGCCCGUCGCggaauCCAcugcaAGUcgUuaacgcGCACGu -3'
miRNA:   3'- -CGUCGGGCGGCG-----GGU-----UUAuaA------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 70332 0.66 0.913183
Target:  5'- uGCAGUugcaCGCgGCCCAcAUAgcGCACc -3'
miRNA:   3'- -CGUCGg---GCGgCGGGUuUAUaaCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.