miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21192 3' -58.7 NC_004778.3 + 25238 0.66 0.748904
Target:  5'- -----uGAUCGCGagCCGGGUCgUCGCc -3'
miRNA:   3'- uuucauCUGGCGCg-GGCCCAGgAGUG- -5'
21192 3' -58.7 NC_004778.3 + 55865 0.66 0.739177
Target:  5'- uAAGGUAGGCCGUGUguUCGGcGUCaC-CACg -3'
miRNA:   3'- -UUUCAUCUGGCGCG--GGCC-CAG-GaGUG- -5'
21192 3' -58.7 NC_004778.3 + 120625 0.66 0.738199
Target:  5'- -uAGUAGGCgccauucgcugagCGCGCCCGccgCCUCGCc -3'
miRNA:   3'- uuUCAUCUG-------------GCGCGGGCccaGGAGUG- -5'
21192 3' -58.7 NC_004778.3 + 41125 0.66 0.719453
Target:  5'- cGAGUGG-CCGUGgaCGGuGUCUUCACg -3'
miRNA:   3'- uUUCAUCuGGCGCggGCC-CAGGAGUG- -5'
21192 3' -58.7 NC_004778.3 + 110806 0.67 0.679174
Target:  5'- -cGGUAGGCgGCGCgCGGcGUUuuuugCUCACg -3'
miRNA:   3'- uuUCAUCUGgCGCGgGCC-CAG-----GAGUG- -5'
21192 3' -58.7 NC_004778.3 + 89188 0.67 0.668986
Target:  5'- -cGGUGG-CCGCGCCCgucuuuuuGGGcgCCUgGCu -3'
miRNA:   3'- uuUCAUCuGGCGCGGG--------CCCa-GGAgUG- -5'
21192 3' -58.7 NC_004778.3 + 113905 0.74 0.318297
Target:  5'- ----aAGGCgGCGCCgCGGGuUCCUCGCu -3'
miRNA:   3'- uuucaUCUGgCGCGG-GCCC-AGGAGUG- -5'
21192 3' -58.7 NC_004778.3 + 115444 1.07 0.001531
Target:  5'- aAAAGUAGACCGCGCCCGGGUCCUCACa -3'
miRNA:   3'- -UUUCAUCUGGCGCGGGCCCAGGAGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.