miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 5' -60.8 NC_004778.3 + 92984 0.71 0.398231
Target:  5'- uUGUGCAaCgacaaaGUCGCCGCCGGCcGCg -3'
miRNA:   3'- -ACGCGUcGaa----CAGCGGCGGCCGcUGg -5'
21208 5' -60.8 NC_004778.3 + 2454 0.71 0.365865
Target:  5'- aGUGCGGCa---CGCCGCUGGUuaucGACCa -3'
miRNA:   3'- aCGCGUCGaacaGCGGCGGCCG----CUGG- -5'
21208 5' -60.8 NC_004778.3 + 29170 0.71 0.365865
Target:  5'- aGCGCGugacGCUgccacggGUCGUCGCuCGGCaGCCa -3'
miRNA:   3'- aCGCGU----CGAa------CAGCGGCG-GCCGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 48860 0.71 0.365865
Target:  5'- uUGCGCAGUUgGUCGCgcacgGCCuuGGCGGCa -3'
miRNA:   3'- -ACGCGUCGAaCAGCGg----CGG--CCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 90558 0.71 0.373784
Target:  5'- aGUgGCAGCgc-UCGCCGCCGaGCGcagcGCCg -3'
miRNA:   3'- aCG-CGUCGaacAGCGGCGGC-CGC----UGG- -5'
21208 5' -60.8 NC_004778.3 + 61371 0.71 0.373784
Target:  5'- gGCGcCGGCgcGUCGUCGCUGaGCG-CCa -3'
miRNA:   3'- aCGC-GUCGaaCAGCGGCGGC-CGCuGG- -5'
21208 5' -60.8 NC_004778.3 + 14526 0.71 0.381819
Target:  5'- cGCGCGuGCgucacGUCG-UGCCGGaCGACCg -3'
miRNA:   3'- aCGCGU-CGaa---CAGCgGCGGCC-GCUGG- -5'
21208 5' -60.8 NC_004778.3 + 62085 0.71 0.382629
Target:  5'- cGCGCGGUUUuuuucguugagcacGUaaugguaguaggugcCGCCGCCGGCGAa- -3'
miRNA:   3'- aCGCGUCGAA--------------CA---------------GCGGCGGCCGCUgg -5'
21208 5' -60.8 NC_004778.3 + 124084 0.71 0.389968
Target:  5'- gGCGC-GCUgaUGcgCGCgGuuGGCGGCCu -3'
miRNA:   3'- aCGCGuCGA--ACa-GCGgCggCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 72472 0.71 0.363512
Target:  5'- gGUGCGGUUauauuugugccaagUGcCGCCGUCGGUGGCg -3'
miRNA:   3'- aCGCGUCGA--------------ACaGCGGCGGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 25294 0.71 0.357288
Target:  5'- cGCGCAGCgcacuucGUCGCCGCgucccaagUaguagaacccauuGGCGGCCa -3'
miRNA:   3'- aCGCGUCGaa-----CAGCGGCG--------G-------------CCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 51801 0.72 0.32803
Target:  5'- --aGgGGCUUGUCGCCuuucaGGCGACCg -3'
miRNA:   3'- acgCgUCGAACAGCGGcgg--CCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 38936 0.75 0.221425
Target:  5'- cUGCGCgugcggaucGGCgugGUCGCCGCCGcGC-ACCa -3'
miRNA:   3'- -ACGCG---------UCGaa-CAGCGGCGGC-CGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 112468 0.75 0.221425
Target:  5'- aUGUGCGGCa-GUCGCucgCGCCaGCGGCCg -3'
miRNA:   3'- -ACGCGUCGaaCAGCG---GCGGcCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 10251 0.74 0.242944
Target:  5'- gUGCGCAGCg---CGCCGauugcgcgcgggaCCGGCGGCg -3'
miRNA:   3'- -ACGCGUCGaacaGCGGC-------------GGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 114272 0.74 0.24932
Target:  5'- gGCGgAGaugucguucaaCUUGUCGCUGCCG-CGACCg -3'
miRNA:   3'- aCGCgUC-----------GAACAGCGGCGGCcGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 25645 0.74 0.261267
Target:  5'- uUGUGCaAGCUUG-CGCggggGCCGGCGGCg -3'
miRNA:   3'- -ACGCG-UCGAACaGCGg---CGGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 34142 0.74 0.261267
Target:  5'- cGCGCGuacgacgacGCg-GUCGCCGgCGGCGACa -3'
miRNA:   3'- aCGCGU---------CGaaCAGCGGCgGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 56391 0.74 0.267413
Target:  5'- uUGCGCGGCggGUCGCUGCCG-CaAUCg -3'
miRNA:   3'- -ACGCGUCGaaCAGCGGCGGCcGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 8706 0.72 0.323689
Target:  5'- cGCGCcggguuacGGUUUGgccgagaacuuugaCGCCGCCGGCG-CCg -3'
miRNA:   3'- aCGCG--------UCGAACa-------------GCGGCGGCCGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.