miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 5' -60.8 NC_004778.3 + 30719 0.66 0.653201
Target:  5'- --aGCAcGCUgcgGcCGCgGCCGGCuGCCa -3'
miRNA:   3'- acgCGU-CGAa--CaGCGgCGGCCGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 65476 0.66 0.643199
Target:  5'- gGCGUAgGUUUGUCGgCGuuGGUGcGCUu -3'
miRNA:   3'- aCGCGU-CGAACAGCgGCggCCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 101664 0.66 0.643199
Target:  5'- aGCGCgGGCagguugaugaagUUGUCGCuCGCCuGCaACCg -3'
miRNA:   3'- aCGCG-UCG------------AACAGCG-GCGGcCGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 127441 0.66 0.642198
Target:  5'- cGCGauuuaaaUAGCUUG-CGCCGCa-GCGugCa -3'
miRNA:   3'- aCGC-------GUCGAACaGCGGCGgcCGCugG- -5'
21208 5' -60.8 NC_004778.3 + 34935 0.66 0.637193
Target:  5'- gUGCGCGGCggcGUCGUuauugugccaacguUGCaacucggauuucgaUGGCGGCCa -3'
miRNA:   3'- -ACGCGUCGaa-CAGCG--------------GCG--------------GCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 27865 0.66 0.633188
Target:  5'- gUGCGUauggcaAGUUUGUaCGCgGCggcgagugugUGGCGGCCa -3'
miRNA:   3'- -ACGCG------UCGAACA-GCGgCG----------GCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 119984 0.66 0.633188
Target:  5'- aGUGUgAGCUg--CGCCGCCGaGaCGACg -3'
miRNA:   3'- aCGCG-UCGAacaGCGGCGGC-C-GCUGg -5'
21208 5' -60.8 NC_004778.3 + 120705 0.66 0.633188
Target:  5'- gGCGC-GCca--CGgCGCCGGCGGCg -3'
miRNA:   3'- aCGCGuCGaacaGCgGCGGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 126978 0.67 0.623177
Target:  5'- --aGCAGCUUGUaaguuaccaCGCC-CaCGGCGuACCa -3'
miRNA:   3'- acgCGUCGAACA---------GCGGcG-GCCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 8018 0.67 0.614172
Target:  5'- cUGCGCGGCguuuucgaaggggcUGcuagcgugcacccaUCGCCGCgGGCuGAUCa -3'
miRNA:   3'- -ACGCGUCGa-------------AC--------------AGCGGCGgCCG-CUGG- -5'
21208 5' -60.8 NC_004778.3 + 45910 0.67 0.613172
Target:  5'- cGCGCgacgAGCcaUGUU-CCGCCGGCGaACUg -3'
miRNA:   3'- aCGCG----UCGa-ACAGcGGCGGCCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 67307 0.67 0.613172
Target:  5'- -aCGCGGUaaUUGaggaccuguUCGCCGgCGGCGGCa -3'
miRNA:   3'- acGCGUCG--AAC---------AGCGGCgGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 64599 0.67 0.613172
Target:  5'- gGCGCAGUg---CGCCGaCGGgcaaguuuuCGACCg -3'
miRNA:   3'- aCGCGUCGaacaGCGGCgGCC---------GCUGG- -5'
21208 5' -60.8 NC_004778.3 + 94776 0.67 0.613172
Target:  5'- cGCGCuGCUgugcaGuuGCCuGCGGCCc -3'
miRNA:   3'- aCGCGuCGAacag-CggCGGcCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 125392 0.67 0.60318
Target:  5'- gGCGCucGGCcUG-C-CCGCCGGCGAa- -3'
miRNA:   3'- aCGCG--UCGaACaGcGGCGGCCGCUgg -5'
21208 5' -60.8 NC_004778.3 + 58158 0.67 0.60318
Target:  5'- aGCGC-GCcacccgacGUCGCCGCCGccGCcGCCg -3'
miRNA:   3'- aCGCGuCGaa------CAGCGGCGGC--CGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 19467 0.67 0.59321
Target:  5'- ---cCAGCUUGUCGUCGCacguaaugGGCGcGCCg -3'
miRNA:   3'- acgcGUCGAACAGCGGCGg-------CCGC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 116747 0.67 0.59321
Target:  5'- cGCcaaAGC---UCGCCGCCGGuCGGCUg -3'
miRNA:   3'- aCGcg-UCGaacAGCGGCGGCC-GCUGG- -5'
21208 5' -60.8 NC_004778.3 + 93111 0.67 0.59321
Target:  5'- -uCGCaAGCUaaauUGcUCGCCGCgcUGGCGAUCa -3'
miRNA:   3'- acGCG-UCGA----AC-AGCGGCG--GCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 81750 0.67 0.59321
Target:  5'- gGCGCGGCggGUgGCggaccgacugCGCCGguaggugcGCGGCCu -3'
miRNA:   3'- aCGCGUCGaaCAgCG----------GCGGC--------CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.