miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21210 3' -62.5 NC_004778.3 + 92977 1.09 0.000633
Target:  5'- cGCGUGGUGGCGCCCACCACACCGCCGu -3'
miRNA:   3'- -CGCACCACCGCGGGUGGUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 120693 0.78 0.121915
Target:  5'- aGUGgacggGGUGGCGCgCCACgGCGCCGgCGg -3'
miRNA:   3'- -CGCa----CCACCGCG-GGUGgUGUGGCgGC- -5'
21210 3' -62.5 NC_004778.3 + 91803 0.73 0.240441
Target:  5'- uUGUGGUGcCGgUCACgGCGCCGCCGa -3'
miRNA:   3'- cGCACCACcGCgGGUGgUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 36692 0.73 0.251258
Target:  5'- cCGUGGgcaacaccGCGCUCGCCaagacgcGCACCGCCGg -3'
miRNA:   3'- cGCACCac------CGCGGGUGG-------UGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 120969 0.73 0.257701
Target:  5'- cGCG-GGccGCGCCCGCUgccccgGCGCCGCCu -3'
miRNA:   3'- -CGCaCCacCGCGGGUGG------UGUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 36466 0.72 0.263676
Target:  5'- gGUGUGGUGG-GCgCCACCACGCgcuugGCCu -3'
miRNA:   3'- -CGCACCACCgCG-GGUGGUGUGg----CGGc -5'
21210 3' -62.5 NC_004778.3 + 65281 0.72 0.275962
Target:  5'- aCGUGaUGGaCGCCCACCGCGCCaaCGu -3'
miRNA:   3'- cGCACcACC-GCGGGUGGUGUGGcgGC- -5'
21210 3' -62.5 NC_004778.3 + 86306 0.72 0.288701
Target:  5'- aCGUGc-GGCGCgCCGCgGCGCCGUCGa -3'
miRNA:   3'- cGCACcaCCGCG-GGUGgUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 11992 0.72 0.301898
Target:  5'- aCGUGGcaGGC-CgCUGCCGCGCCGCCGc -3'
miRNA:   3'- cGCACCa-CCGcG-GGUGGUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 65931 0.71 0.306625
Target:  5'- cGCGUuGUGGCG-CCGCCGCAgcaugagcccgaauCCGCCc -3'
miRNA:   3'- -CGCAcCACCGCgGGUGGUGU--------------GGCGGc -5'
21210 3' -62.5 NC_004778.3 + 104018 0.71 0.315554
Target:  5'- cGCGUGuUGGgGUCCAgCGaGCCGCCGu -3'
miRNA:   3'- -CGCACcACCgCGGGUgGUgUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 30670 0.71 0.315554
Target:  5'- cGCGUcgcuggggauGGUGGCGgCUugCACGCgCGCUGc -3'
miRNA:   3'- -CGCA----------CCACCGCgGGugGUGUG-GCGGC- -5'
21210 3' -62.5 NC_004778.3 + 92789 0.71 0.329672
Target:  5'- uGCGUggacgaGGUGGUGCUgggCACCGCAaaaUGCCGg -3'
miRNA:   3'- -CGCA------CCACCGCGG---GUGGUGUg--GCGGC- -5'
21210 3' -62.5 NC_004778.3 + 64162 0.71 0.336904
Target:  5'- gGCGcGGUgGGCGUCCAUCACgucguacaauuGCgCGCCGa -3'
miRNA:   3'- -CGCaCCA-CCGCGGGUGGUG-----------UG-GCGGC- -5'
21210 3' -62.5 NC_004778.3 + 79225 0.71 0.344251
Target:  5'- cGCGUGGUGaccguCGCgCGCCACuGCCGCg- -3'
miRNA:   3'- -CGCACCACc----GCGgGUGGUG-UGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 80417 0.71 0.344251
Target:  5'- cGCGUcaaaGUacGGCGCCaGCCGCACCGCgCGc -3'
miRNA:   3'- -CGCAc---CA--CCGCGGgUGGUGUGGCG-GC- -5'
21210 3' -62.5 NC_004778.3 + 97397 0.7 0.366976
Target:  5'- cGUGUGGcGGCGCgCAaggaaGCCGCCGg -3'
miRNA:   3'- -CGCACCaCCGCGgGUggug-UGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 82265 0.7 0.374777
Target:  5'- aGCGUGGUGcGUuugucgcgGCCCACCGuuUCGCCc -3'
miRNA:   3'- -CGCACCAC-CG--------CGGGUGGUguGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 90489 0.7 0.374777
Target:  5'- aCGUGGUgcgcGGCGgCgACCACGCCGauCCGc -3'
miRNA:   3'- cGCACCA----CCGCgGgUGGUGUGGC--GGC- -5'
21210 3' -62.5 NC_004778.3 + 4531 0.7 0.377928
Target:  5'- cGCGUGGuguUcguuaaaucuaucacGGCGCCCAgCGCGCUguGCCGc -3'
miRNA:   3'- -CGCACC---A---------------CCGCGGGUgGUGUGG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.