miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21210 3' -62.5 NC_004778.3 + 86933 0.67 0.513544
Target:  5'- cCGUuGUcgGGCacGCCgACCACGCCGCCc -3'
miRNA:   3'- cGCAcCA--CCG--CGGgUGGUGUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 103554 0.67 0.513544
Target:  5'- aGCGUGccaGCGCCCACgguCGCGCCGgCa -3'
miRNA:   3'- -CGCACcacCGCGGGUG---GUGUGGCgGc -5'
21210 3' -62.5 NC_004778.3 + 77374 0.67 0.513544
Target:  5'- cGCGcUGGUGcaaugcgcacGCGCCgGCCGCGUCGCUu -3'
miRNA:   3'- -CGC-ACCAC----------CGCGGgUGGUGUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 52988 0.67 0.513544
Target:  5'- --cUGGccgcaGGC-CCCGCCGCaACCGCCGc -3'
miRNA:   3'- cgcACCa----CCGcGGGUGGUG-UGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 7867 0.68 0.5042
Target:  5'- aGCGcGGUGGCGCCCACguuUACCu--- -3'
miRNA:   3'- -CGCaCCACCGCGGGUGgu-GUGGcggc -5'
21210 3' -62.5 NC_004778.3 + 88364 0.68 0.485739
Target:  5'- uCGUGGUGGUGUUgggCACCGCGCUGgaCGc -3'
miRNA:   3'- cGCACCACCGCGG---GUGGUGUGGCg-GC- -5'
21210 3' -62.5 NC_004778.3 + 10687 0.68 0.485739
Target:  5'- aGCGUGGcacguguugagUGuGCG-CCGCCGCGCCgagGCCa -3'
miRNA:   3'- -CGCACC-----------AC-CGCgGGUGGUGUGG---CGGc -5'
21210 3' -62.5 NC_004778.3 + 43967 0.68 0.475724
Target:  5'- cGCGauuaUGGauuacuuUGGCGCgCCGCCcaacGCGCgGCCGg -3'
miRNA:   3'- -CGC----ACC-------ACCGCG-GGUGG----UGUGgCGGC- -5'
21210 3' -62.5 NC_004778.3 + 89818 0.68 0.467606
Target:  5'- cGC-UGGaacGGUGCCCGCCGgACUGuCCGu -3'
miRNA:   3'- -CGcACCa--CCGCGGGUGGUgUGGC-GGC- -5'
21210 3' -62.5 NC_004778.3 + 69260 0.68 0.467606
Target:  5'- gGCGUgccguugcaaaaGGUGGCGCgCUuaaugaACCACGauUCGCCGg -3'
miRNA:   3'- -CGCA------------CCACCGCG-GG------UGGUGU--GGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 50210 0.68 0.466709
Target:  5'- cGCGgcaGUGGCGCgcgacggUCACCACG-CGCCGu -3'
miRNA:   3'- -CGCac-CACCGCG-------GGUGGUGUgGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 81752 0.68 0.458671
Target:  5'- cGCGgcgGGUGGCGgaCCG--ACugCGCCGg -3'
miRNA:   3'- -CGCa--CCACCGCg-GGUggUGugGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 6542 0.68 0.458671
Target:  5'- cGUGuUGGUGGCGCCgACC---CCGCUu -3'
miRNA:   3'- -CGC-ACCACCGCGGgUGGuguGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 31453 0.68 0.449828
Target:  5'- uGCGaucuuUGGacGCGCCCAauaC-CACCGCCGa -3'
miRNA:   3'- -CGC-----ACCacCGCGGGUg--GuGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 95253 0.68 0.449828
Target:  5'- gGCaUGGUGcgccGCGgCgACCGCACCGUCGc -3'
miRNA:   3'- -CGcACCAC----CGCgGgUGGUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 63657 0.69 0.431569
Target:  5'- -gGUGGcacuucUGGUGCCCaaugaucGCCGuCACCGCCc -3'
miRNA:   3'- cgCACC------ACCGCGGG-------UGGU-GUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 100061 0.69 0.423877
Target:  5'- cCGUGGUGGUgucGCCCGgCAaACCGCg- -3'
miRNA:   3'- cGCACCACCG---CGGGUgGUgUGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 10653 0.69 0.423877
Target:  5'- uCGUaauuGUGcGCGCCgGCCGCGCCGCg- -3'
miRNA:   3'- cGCAc---CAC-CGCGGgUGGUGUGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 27484 0.69 0.407083
Target:  5'- aCGUGccGUGG-GCCgACCACAUgGCCGu -3'
miRNA:   3'- cGCAC--CACCgCGGgUGGUGUGgCGGC- -5'
21210 3' -62.5 NC_004778.3 + 4531 0.7 0.377928
Target:  5'- cGCGUGGuguUcguuaaaucuaucacGGCGCCCAgCGCGCUguGCCGc -3'
miRNA:   3'- -CGCACC---A---------------CCGCGGGUgGUGUGG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.