miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21243 3' -51.9 NC_004778.3 + 75942 0.66 0.981042
Target:  5'- aCCGUauuugcCCGAgGCCGUGUUUGcGCacauGCUUGc -3'
miRNA:   3'- -GGCA------GGUU-UGGCACAAAC-CGc---CGAAC- -5'
21243 3' -51.9 NC_004778.3 + 57123 0.67 0.9737
Target:  5'- -gGUCCAGcGCCGUGUUcacgccGCGGCa-- -3'
miRNA:   3'- ggCAGGUU-UGGCACAAac----CGCCGaac -5'
21243 3' -51.9 NC_004778.3 + 66096 0.67 0.96778
Target:  5'- gCUG-CCGAuCCGUGUUUGaCGGCg-- -3'
miRNA:   3'- -GGCaGGUUuGGCACAAACcGCCGaac -5'
21243 3' -51.9 NC_004778.3 + 39763 0.67 0.964489
Target:  5'- cCCG-CCGGACUGUccgUGGCGGUc-- -3'
miRNA:   3'- -GGCaGGUUUGGCAcaaACCGCCGaac -5'
21243 3' -51.9 NC_004778.3 + 95110 0.68 0.957218
Target:  5'- gCGUCuCGGACCGUGcgcGGcCGGCa-- -3'
miRNA:   3'- gGCAG-GUUUGGCACaaaCC-GCCGaac -5'
21243 3' -51.9 NC_004778.3 + 106324 0.68 0.957218
Target:  5'- aUGUCCAccauguacuuGACCGUGUUguugccgGGCGGa--- -3'
miRNA:   3'- gGCAGGU----------UUGGCACAAa------CCGCCgaac -5'
21243 3' -51.9 NC_004778.3 + 53114 0.68 0.957218
Target:  5'- aUGUCCAuacgggugauagGGCUGUGgcggaGGCGGCUg- -3'
miRNA:   3'- gGCAGGU------------UUGGCACaaa--CCGCCGAac -5'
21243 3' -51.9 NC_004778.3 + 59211 0.68 0.944507
Target:  5'- aCCGUUUAAACUGUGgcUGGaGGCc-- -3'
miRNA:   3'- -GGCAGGUUUGGCACaaACCgCCGaac -5'
21243 3' -51.9 NC_004778.3 + 77570 0.68 0.934789
Target:  5'- gCUGUCCAuaauggugguuAUCGUGUUugUGGUGGCg-- -3'
miRNA:   3'- -GGCAGGUu----------UGGCACAA--ACCGCCGaac -5'
21243 3' -51.9 NC_004778.3 + 12743 0.68 0.934789
Target:  5'- gCCGcgCCGAuuCCGcUGUcgGGCGaGCUUGg -3'
miRNA:   3'- -GGCa-GGUUu-GGC-ACAaaCCGC-CGAAC- -5'
21243 3' -51.9 NC_004778.3 + 82838 1.12 0.004023
Target:  5'- aCCGUCCAAACCGUGUUUGGCGGCUUGg -3'
miRNA:   3'- -GGCAGGUUUGGCACAAACCGCCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.