Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21258 | 5' | -62.7 | NC_004778.3 | + | 120965 | 0.72 | 0.271028 |
Target: 5'- gGGGCGCGGGccgCGcCCGCUGCcccGGCg -3' miRNA: 3'- -UCCGCGCCCua-GCcGGCGACGca-CUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 122895 | 0.66 | 0.585938 |
Target: 5'- uGGaaaGCGGGGUCGGC-GCcaccaacaCGUGACu -3' miRNA: 3'- uCCg--CGCCCUAGCCGgCGac------GCACUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 25656 | 0.66 | 0.566298 |
Target: 5'- -uGCGCGGGGgcCGGCgGC-GUGUGGg -3' miRNA: 3'- ucCGCGCCCUa-GCCGgCGaCGCACUg -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 121600 | 0.67 | 0.518053 |
Target: 5'- aAGGCGCGGGuUCuGCUGCaGCGc-GCg -3' miRNA: 3'- -UCCGCGCCCuAGcCGGCGaCGCacUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 71473 | 0.68 | 0.453513 |
Target: 5'- uAGGCGaGGGuGUCGGCgGggGCGUuGGCg -3' miRNA: 3'- -UCCGCgCCC-UAGCCGgCgaCGCA-CUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 71425 | 0.68 | 0.453513 |
Target: 5'- uAGGCGaGGGuGUCGGCgGggGCGUaGGCg -3' miRNA: 3'- -UCCGCgCCC-UAGCCGgCgaCGCA-CUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 71377 | 0.68 | 0.453513 |
Target: 5'- uAGGCGaGGGuGUCGGCgGggGCGUaGGCg -3' miRNA: 3'- -UCCGCgCCC-UAGCCGgCgaCGCA-CUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 63489 | 0.7 | 0.354062 |
Target: 5'- cGGCGCGGGcggauUCGGgcucaUGCUGCGgcGGCg -3' miRNA: 3'- uCCGCGCCCu----AGCCg----GCGACGCa-CUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 71329 | 0.7 | 0.317416 |
Target: 5'- uAGGCGaGGGuGUCGGCgGgaGCGUaGGCg -3' miRNA: 3'- -UCCGCgCCC-UAGCCGgCgaCGCA-CUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 2549 | 0.71 | 0.296835 |
Target: 5'- cGGGCGCGGGcacGUCGGCCaCcGCGcgGAa -3' miRNA: 3'- -UCCGCGCCC---UAGCCGGcGaCGCa-CUg -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 119121 | 0.68 | 0.43588 |
Target: 5'- cGGGCGCGGGAaCGGCgcccaauaagaCGCUGU-UGGu -3' miRNA: 3'- -UCCGCGCCCUaGCCG-----------GCGACGcACUg -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 1569 | 0.67 | 0.480669 |
Target: 5'- cGGCGUGuuuGAUCGGCgCGCUGC-UGcACu -3' miRNA: 3'- uCCGCGCc--CUAGCCG-GCGACGcAC-UG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 108550 | 0.67 | 0.521857 |
Target: 5'- cGGCaaaaGCGuGGUCGGCgGCguuuugugcaaacgaUGCGUGGCg -3' miRNA: 3'- uCCG----CGCcCUAGCCGgCG---------------ACGCACUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 98948 | 0.66 | 0.527583 |
Target: 5'- --aCGCGGGGUCGGaCCGCguguugucGCGUcGCu -3' miRNA: 3'- uccGCGCCCUAGCC-GGCGa-------CGCAcUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 68595 | 0.66 | 0.537178 |
Target: 5'- cGGCgGCGGcGG-CGGCgGCgGCgGUGGCg -3' miRNA: 3'- uCCG-CGCC-CUaGCCGgCGaCG-CACUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 38317 | 0.66 | 0.546832 |
Target: 5'- uAGGCGCGGGuagcguggagguGUCGaGCgGCgcaGCG-GGCc -3' miRNA: 3'- -UCCGCGCCC------------UAGC-CGgCGa--CGCaCUG- -5' |
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21258 | 5' | -62.7 | NC_004778.3 | + | 105611 | 1.08 | 0.000708 |
Target: 5'- gAGGCGCGGGAUCGGCCGCUGCGUGACc -3' miRNA: 3'- -UCCGCGCCCUAGCCGGCGACGCACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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