Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21262 | 3' | -51.2 | NC_004778.3 | + | 64610 | 0.66 | 0.990971 |
Target: 5'- cCGGCCUcggcguCGAACGUGuaguuGUCGggGCa -3' miRNA: 3'- aGCUGGAau----GCUUGCGCu----CGGCaaUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 61352 | 0.66 | 0.990971 |
Target: 5'- uUCGGCUUcaugUGCGGACG-GcGCCGgcGCg -3' miRNA: 3'- -AGCUGGA----AUGCUUGCgCuCGGCaaUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 125667 | 0.66 | 0.990971 |
Target: 5'- aCGGCCUgGCGcuCGUu-GUCGUUACg -3' miRNA: 3'- aGCUGGAaUGCuuGCGcuCGGCAAUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 50139 | 0.66 | 0.989677 |
Target: 5'- gUCGAgUaacacgUACgGAAUGCGAucGCCGUUGCc -3' miRNA: 3'- -AGCUgGa-----AUG-CUUGCGCU--CGGCAAUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 83442 | 0.66 | 0.989677 |
Target: 5'- uUCGAUaa-GCGAuaGCGCGgAGCCGccGCg -3' miRNA: 3'- -AGCUGgaaUGCU--UGCGC-UCGGCaaUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 26739 | 0.66 | 0.988243 |
Target: 5'- uUCGACgCUuggUGCGAACGaCGAcaacuaugcgGCCG-UGCg -3' miRNA: 3'- -AGCUG-GA---AUGCUUGC-GCU----------CGGCaAUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 36509 | 0.66 | 0.988243 |
Target: 5'- aUGACg-UugGAGugcaGCGuGCCGUUGCg -3' miRNA: 3'- aGCUGgaAugCUUg---CGCuCGGCAAUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 21655 | 0.66 | 0.988243 |
Target: 5'- uUCGGCCg-GCGGugGCGGcGCCa---- -3' miRNA: 3'- -AGCUGGaaUGCUugCGCU-CGGcaaug -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 105819 | 0.66 | 0.986659 |
Target: 5'- --cACCaUGCGGACGUGGgacGUCGUUGCc -3' miRNA: 3'- agcUGGaAUGCUUGCGCU---CGGCAAUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 72518 | 0.66 | 0.984915 |
Target: 5'- gUCGACgacGCGGACGCcgacGAGCCGa--- -3' miRNA: 3'- -AGCUGgaaUGCUUGCG----CUCGGCaaug -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 125518 | 0.66 | 0.984915 |
Target: 5'- aCGACa--ACGAGCGCcaGGCCGUUc- -3' miRNA: 3'- aGCUGgaaUGCUUGCGc-UCGGCAAug -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 93064 | 0.66 | 0.984915 |
Target: 5'- -aGGCCUUACcuAUGCGAcGCCGgcucgcUGCg -3' miRNA: 3'- agCUGGAAUGcuUGCGCU-CGGCa-----AUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 77109 | 0.66 | 0.983004 |
Target: 5'- aCGG-CUUGCG-AUGCGGGCCaGUUGg -3' miRNA: 3'- aGCUgGAAUGCuUGCGCUCGG-CAAUg -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 111833 | 0.67 | 0.980915 |
Target: 5'- cUCGGCCUgcuagcCGAcaACgGCGGGCUGaUGCa -3' miRNA: 3'- -AGCUGGAau----GCU--UG-CGCUCGGCaAUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 112047 | 0.67 | 0.97617 |
Target: 5'- -gGGCCgcacguUGAACGCGGGCaCGUcgucUACg -3' miRNA: 3'- agCUGGaau---GCUUGCGCUCG-GCA----AUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 6244 | 0.67 | 0.973497 |
Target: 5'- uUCGGCCUUuuGcAGCGCGGGCaaauugGCa -3' miRNA: 3'- -AGCUGGAAugC-UUGCGCUCGgcaa--UG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 73377 | 0.68 | 0.967512 |
Target: 5'- cCGAUaaaUACGGaauuggcgccaACGCGAGCCGUacccUGCu -3' miRNA: 3'- aGCUGga-AUGCU-----------UGCGCUCGGCA----AUG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 62239 | 0.68 | 0.967512 |
Target: 5'- aCGugCUcaACGAaaaaaaccgcGCGCGAGUCGUgggGCu -3' miRNA: 3'- aGCugGAa-UGCU----------UGCGCUCGGCAa--UG- -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 65749 | 0.68 | 0.964185 |
Target: 5'- aCGGCgUUugGcGCaGCGAGCCGg--- -3' miRNA: 3'- aGCUGgAAugCuUG-CGCUCGGCaaug -5' |
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21262 | 3' | -51.2 | NC_004778.3 | + | 53177 | 0.68 | 0.964185 |
Target: 5'- gUCGGCCg-ACGAaauACGCGAGCUa---- -3' miRNA: 3'- -AGCUGGaaUGCU---UGCGCUCGGcaaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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