miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21314 3' -51.6 NC_004778.3 + 7299 0.66 0.981522
Target:  5'- gGCG-CGCCGCCcGCCgAGACGGa--- -3'
miRNA:   3'- -CGCgGUGGUGGuCGGaUUUGUCaaug -5'
21314 3' -51.6 NC_004778.3 + 103868 0.66 0.981522
Target:  5'- aCGCCACgGCC-GUCUuuauuucuaAAACAGUUGu -3'
miRNA:   3'- cGCGGUGgUGGuCGGA---------UUUGUCAAUg -5'
21314 3' -51.6 NC_004778.3 + 9559 0.66 0.981522
Target:  5'- aCGCCG-CGCCGGCCgaaaAAGCcGUUAa -3'
miRNA:   3'- cGCGGUgGUGGUCGGa---UUUGuCAAUg -5'
21314 3' -51.6 NC_004778.3 + 52583 0.66 0.981522
Target:  5'- uCGCCACCuGCCGcaaccGCUgcucCAGUUACa -3'
miRNA:   3'- cGCGGUGG-UGGU-----CGGauuuGUCAAUG- -5'
21314 3' -51.6 NC_004778.3 + 96974 0.66 0.981306
Target:  5'- gGUGUCGCUugaCAGCCUGAuguacucggagcaGCGGUUGa -3'
miRNA:   3'- -CGCGGUGGug-GUCGGAUU-------------UGUCAAUg -5'
21314 3' -51.6 NC_004778.3 + 115565 0.66 0.980867
Target:  5'- aGCGCUgGCCaaggACCAGUucaaguauuuguuuCUGAGCAGUUAUu -3'
miRNA:   3'- -CGCGG-UGG----UGGUCG--------------GAUUUGUCAAUG- -5'
21314 3' -51.6 NC_004778.3 + 33110 0.66 0.97927
Target:  5'- aCGCgGCCGCaCAGCCacgcGGCGGUg-- -3'
miRNA:   3'- cGCGgUGGUG-GUCGGau--UUGUCAaug -5'
21314 3' -51.6 NC_004778.3 + 71058 0.66 0.97927
Target:  5'- -gGCCGCguCCAGCCgcugcACAGcgGCc -3'
miRNA:   3'- cgCGGUGguGGUCGGauu--UGUCaaUG- -5'
21314 3' -51.6 NC_004778.3 + 9884 0.66 0.97927
Target:  5'- cGCGCCGCCaaaguGCC-GCCcGGgcGCGGUgUGCg -3'
miRNA:   3'- -CGCGGUGG-----UGGuCGGaUU--UGUCA-AUG- -5'
21314 3' -51.6 NC_004778.3 + 45333 0.66 0.97682
Target:  5'- uGCGCuCGCCGCCGGUgUuGACAa---- -3'
miRNA:   3'- -CGCG-GUGGUGGUCGgAuUUGUcaaug -5'
21314 3' -51.6 NC_004778.3 + 90697 0.66 0.97682
Target:  5'- aGCGCUGCCACUAuCCgacgcuGCAGUg-- -3'
miRNA:   3'- -CGCGGUGGUGGUcGGauu---UGUCAaug -5'
21314 3' -51.6 NC_004778.3 + 29089 0.66 0.97682
Target:  5'- gGCGCCGCC-UCGGCg-GAGCGGa--- -3'
miRNA:   3'- -CGCGGUGGuGGUCGgaUUUGUCaaug -5'
21314 3' -51.6 NC_004778.3 + 14181 0.66 0.97682
Target:  5'- uCGCCGgCACCAGCaacaUGAcACAGcugGCg -3'
miRNA:   3'- cGCGGUgGUGGUCGg---AUU-UGUCaa-UG- -5'
21314 3' -51.6 NC_004778.3 + 35135 0.66 0.976305
Target:  5'- uUGCUGCUGCCGGCCgacgcaaauuGCGcGUUGCa -3'
miRNA:   3'- cGCGGUGGUGGUCGGauu-------UGU-CAAUG- -5'
21314 3' -51.6 NC_004778.3 + 47801 0.66 0.974163
Target:  5'- uGCGCgACUuuugccugguuGCCAGCUcGAACgcuAGUUACu -3'
miRNA:   3'- -CGCGgUGG-----------UGGUCGGaUUUG---UCAAUG- -5'
21314 3' -51.6 NC_004778.3 + 41993 0.66 0.974163
Target:  5'- uGCGCCGCgaGCCAguucuccaacGCCUccGACAGcgUGCg -3'
miRNA:   3'- -CGCGGUGg-UGGU----------CGGAu-UUGUCa-AUG- -5'
21314 3' -51.6 NC_004778.3 + 127044 0.66 0.974163
Target:  5'- gGCGCCGCCAgCAGUacaacGACA-UUACc -3'
miRNA:   3'- -CGCGGUGGUgGUCGgau--UUGUcAAUG- -5'
21314 3' -51.6 NC_004778.3 + 43988 0.66 0.971292
Target:  5'- cGCGCCGCCcaacGCgCGGCCg--GCGGg--- -3'
miRNA:   3'- -CGCGGUGG----UG-GUCGGauuUGUCaaug -5'
21314 3' -51.6 NC_004778.3 + 209 0.66 0.970993
Target:  5'- cCGCCGCCuuuuuucGCCAGgCUGAuGCGGUa-- -3'
miRNA:   3'- cGCGGUGG-------UGGUCgGAUU-UGUCAaug -5'
21314 3' -51.6 NC_004778.3 + 13621 0.67 0.968199
Target:  5'- aGCGCCGCgugcagCACCAGCU---GCAGa--- -3'
miRNA:   3'- -CGCGGUG------GUGGUCGGauuUGUCaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.