miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21323 5' -50.6 NC_004778.3 + 111386 0.66 0.993553
Target:  5'- uGGugGGC---AUUGUGCUCaucuuguuuacacuGGCGGAUu -3'
miRNA:   3'- -CCugCCGaugUAACACGAG--------------CUGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 83754 0.66 0.992863
Target:  5'- uGGACGcGUuauUGCAU--UGCUCGuuGAGCa -3'
miRNA:   3'- -CCUGC-CG---AUGUAacACGAGCugCUUG- -5'
21323 5' -50.6 NC_004778.3 + 42502 0.66 0.992863
Target:  5'- aGGGCGGCgugguCGgcGUGCcCGAC-AACg -3'
miRNA:   3'- -CCUGCCGau---GUaaCACGaGCUGcUUG- -5'
21323 5' -50.6 NC_004778.3 + 38484 0.66 0.990694
Target:  5'- cGAcCGGUUACAcuuuaaauucaagaGUGCUCGGCGcGCg -3'
miRNA:   3'- cCU-GCCGAUGUaa------------CACGAGCUGCuUG- -5'
21323 5' -50.6 NC_004778.3 + 93317 0.66 0.990567
Target:  5'- --uCGGCUGCcgUGUGU--GACGGAUc -3'
miRNA:   3'- ccuGCCGAUGuaACACGagCUGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 110294 0.66 0.989219
Target:  5'- cGGCaGCUGCAcUGUGC-CGuauACGGACc -3'
miRNA:   3'- cCUGcCGAUGUaACACGaGC---UGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 105130 0.66 0.989219
Target:  5'- cGAUGGCUACAUagaauUGgGCgccgCGGCGcGCu -3'
miRNA:   3'- cCUGCCGAUGUA-----ACaCGa---GCUGCuUG- -5'
21323 5' -50.6 NC_004778.3 + 120457 0.66 0.987726
Target:  5'- aGACGGCaACcg-GcUGCUgGugGAACa -3'
miRNA:   3'- cCUGCCGaUGuaaC-ACGAgCugCUUG- -5'
21323 5' -50.6 NC_004778.3 + 18784 0.67 0.986078
Target:  5'- aGGCGGCgcgcgGCGUUuuuUGCUC-ACGGGCg -3'
miRNA:   3'- cCUGCCGa----UGUAAc--ACGAGcUGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 68060 0.67 0.986078
Target:  5'- gGGGCgGGCUcaACGUcgagcaggcUGUGUUCGAacagccCGAGCg -3'
miRNA:   3'- -CCUG-CCGA--UGUA---------ACACGAGCU------GCUUG- -5'
21323 5' -50.6 NC_004778.3 + 56115 0.68 0.975188
Target:  5'- uGGGCGGCgACA-UGUGCgugcagcaaGugGAAUg -3'
miRNA:   3'- -CCUGCCGaUGUaACACGag-------CugCUUG- -5'
21323 5' -50.6 NC_004778.3 + 103384 0.68 0.974921
Target:  5'- uGGugGcGCUGgcgcccuCGUcGUGUUUGGCGGACa -3'
miRNA:   3'- -CCugC-CGAU-------GUAaCACGAGCUGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 15558 0.68 0.969431
Target:  5'- cGGCGGCgcCAacgGUGCUCcaGugGGGCg -3'
miRNA:   3'- cCUGCCGauGUaa-CACGAG--CugCUUG- -5'
21323 5' -50.6 NC_004778.3 + 104011 0.68 0.969431
Target:  5'- aGACGGCcgugGCGUguggGUGUUCGGCa--- -3'
miRNA:   3'- cCUGCCGa---UGUAa---CACGAGCUGcuug -5'
21323 5' -50.6 NC_004778.3 + 101442 0.68 0.969431
Target:  5'- aGGACGGCUGCuccGUGa---GCGAACc -3'
miRNA:   3'- -CCUGCCGAUGuaaCACgagcUGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 6346 0.68 0.96278
Target:  5'- gGGugGGC--CAUUuUGCUCGugGcGCa -3'
miRNA:   3'- -CCugCCGauGUAAcACGAGCugCuUG- -5'
21323 5' -50.6 NC_004778.3 + 21344 0.68 0.96278
Target:  5'- -aACGGCUGCAcguccGC-CGGCGAGCa -3'
miRNA:   3'- ccUGCCGAUGUaaca-CGaGCUGCUUG- -5'
21323 5' -50.6 NC_004778.3 + 83246 0.69 0.959102
Target:  5'- cGGGCgauuGGCUGCGUUGuUGCa-GACGcGCg -3'
miRNA:   3'- -CCUG----CCGAUGUAAC-ACGagCUGCuUG- -5'
21323 5' -50.6 NC_004778.3 + 73426 0.7 0.926351
Target:  5'- cGACGGuCUGCAcgUGUGUcuaaUCGACGccAACg -3'
miRNA:   3'- cCUGCC-GAUGUa-ACACG----AGCUGC--UUG- -5'
21323 5' -50.6 NC_004778.3 + 90928 0.71 0.899955
Target:  5'- aGGAgGcGCUACAgggcaaauguuuuaUUGUGUggacguUCGACGAGCu -3'
miRNA:   3'- -CCUgC-CGAUGU--------------AACACG------AGCUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.