miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 40700 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40620 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 93539 0.66 0.700911
Target:  5'- gGCCggAGGG-GGC-CGUGGGGGcGGAg -3'
miRNA:   3'- gUGGagUUCCaCCGcGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 40660 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40582 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40739 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 136867 0.66 0.700911
Target:  5'- gCACCgggcuGGUGGCGCGgauCGAGGGu-- -3'
miRNA:   3'- -GUGGaguu-CCACCGCGC---GCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 104149 0.66 0.700911
Target:  5'- uGCCgguaggCGgcAGGaGGCGaCGCGGGcGGGGGg -3'
miRNA:   3'- gUGGa-----GU--UCCaCCGC-GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 76168 0.66 0.700911
Target:  5'- -cCCUCuugcgggcggcuGGGGUGgGCG-GCGGGGaGGGAa -3'
miRNA:   3'- guGGAG------------UUCCAC-CGCgCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 113241 0.66 0.700911
Target:  5'- gGCCgguGGGccGCuCGCGGGGGGGGu -3'
miRNA:   3'- gUGGaguUCCacCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 95854 0.66 0.700911
Target:  5'- aACCggacCGAGGcgcgGGUGCGgugggcCGAGGGGGc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCGC------GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 40543 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 124618 0.66 0.699943
Target:  5'- cCGCCUCc--GUGGCGgaccugcCGCGGccGGGGGGc -3'
miRNA:   3'- -GUGGAGuucCACCGC-------GCGCU--CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 147693 0.66 0.699943
Target:  5'- aACCUCAucaacccGGG-GGUcgugugGCGCGGGGGGc- -3'
miRNA:   3'- gUGGAGU-------UCCaCCG------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 27639 0.66 0.691209
Target:  5'- gAUCUcCAGGGUGGUGUaGUGcAGGGcGGGg -3'
miRNA:   3'- gUGGA-GUUCCACCGCG-CGC-UCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 117595 0.66 0.691209
Target:  5'- gGCUuuUCGGGGUuccgGGcCGgGgGAGGGGGGg -3'
miRNA:   3'- gUGG--AGUUCCA----CC-GCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 139927 0.66 0.691209
Target:  5'- cCGCCggUCGGGGUcGGCGgGUucuGGGGcGGGGg -3'
miRNA:   3'- -GUGG--AGUUCCA-CCGCgCG---CUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 115335 0.66 0.691209
Target:  5'- gCGCCUCGcuGUagcucgGGaGCGCGGGcGGGGAc -3'
miRNA:   3'- -GUGGAGUucCA------CCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 41011 0.66 0.691209
Target:  5'- -cCCUCAGGGUuucccaccgGGuCGcCGUGGGGGuGGGg -3'
miRNA:   3'- guGGAGUUCCA---------CC-GC-GCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 15496 0.66 0.691209
Target:  5'- aGCgUCuGGG-GGCGa-UGAGGGGGAg -3'
miRNA:   3'- gUGgAGuUCCaCCGCgcGCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.