miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 110634 0.66 0.691209
Target:  5'- gACCUCcgcgcGG-GGCGgagaCGCGGGcGGGGAg -3'
miRNA:   3'- gUGGAGuu---CCaCCGC----GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 15496 0.66 0.691209
Target:  5'- aGCgUCuGGG-GGCGa-UGAGGGGGAg -3'
miRNA:   3'- gUGgAGuUCCaCCGCgcGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148496 0.66 0.691209
Target:  5'- gGCUuuUCGGGGUuccgGGcCGgGgGAGGGGGGg -3'
miRNA:   3'- gUGG--AGUUCCA----CC-GCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 43480 0.66 0.687316
Target:  5'- aGCCuUCGGGGgaacgaccgccaGCGCcaucaGCGAGGGGGGc -3'
miRNA:   3'- gUGG-AGUUCCac----------CGCG-----CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 137970 0.66 0.681463
Target:  5'- -cCCUCGucGGGgcggGGuCGgGgGGGGGGGGg -3'
miRNA:   3'- guGGAGU--UCCa---CC-GCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 137967 0.66 0.681463
Target:  5'- gGCCccucgUCGGGGcGGgGuCGgGGGGGGGGg -3'
miRNA:   3'- gUGG-----AGUUCCaCCgC-GCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 151917 0.66 0.681463
Target:  5'- cCGCC-CGGGGcucuggGGCGCGCcgGAGGuGGAc -3'
miRNA:   3'- -GUGGaGUUCCa-----CCGCGCG--CUCCcCCU- -5'
21381 3' -61.5 NC_004812.1 + 26409 0.66 0.681463
Target:  5'- cCGCC-CGGGGcucuggGGCGCGCcgGAGGuGGAc -3'
miRNA:   3'- -GUGGaGUUCCa-----CCGCGCG--CUCCcCCU- -5'
21381 3' -61.5 NC_004812.1 + 153177 0.66 0.675596
Target:  5'- gACCaCGGGG-GGCGCgGCGGcgccggagggccgccGGGGGGa -3'
miRNA:   3'- gUGGaGUUCCaCCGCG-CGCU---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 122276 0.66 0.675596
Target:  5'- gACCaCGGGG-GGCGCgGCGGcgccggagggccgccGGGGGGa -3'
miRNA:   3'- gUGGaGUUCCaCCGCG-CGCU---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 96839 0.66 0.671678
Target:  5'- cUACCUCGAGc-GGUGCGaCGGcGGGGuGAu -3'
miRNA:   3'- -GUGGAGUUCcaCCGCGC-GCU-CCCC-CU- -5'
21381 3' -61.5 NC_004812.1 + 92111 0.66 0.661863
Target:  5'- gGCCUCcucg-GGCGUGCucuGGGGGAu -3'
miRNA:   3'- gUGGAGuuccaCCGCGCGcu-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 71347 0.66 0.661863
Target:  5'- gGCUUCGAcGGgGGCGUGgGuAGGGaGGAa -3'
miRNA:   3'- gUGGAGUU-CCaCCGCGCgC-UCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 20094 0.66 0.655964
Target:  5'- aCGCCUCGgaGGagcgcgccgcgcgcaGcGGCGCGCGGGGGagcGGAc -3'
miRNA:   3'- -GUGGAGU--UC---------------CaCCGCGCGCUCCC---CCU- -5'
21381 3' -61.5 NC_004812.1 + 56991 0.66 0.652027
Target:  5'- gCACCUgCAGgcGGUGGUGaGCGGGGGccugcGGAu -3'
miRNA:   3'- -GUGGA-GUU--CCACCGCgCGCUCCC-----CCU- -5'
21381 3' -61.5 NC_004812.1 + 156494 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 30985 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 84 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 76929 0.66 0.652027
Target:  5'- gCACCcCGAGGcgaGGUGgGCGGGGGcGAu -3'
miRNA:   3'- -GUGGaGUUCCa--CCGCgCGCUCCCcCU- -5'
21381 3' -61.5 NC_004812.1 + 101927 0.66 0.652027
Target:  5'- gGCCUCGGGGccccGGaCGCGCGGcgcGGGcGGc -3'
miRNA:   3'- gUGGAGUUCCa---CC-GCGCGCU---CCC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.