miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 5' -53.9 NC_004812.1 + 17449 0.71 0.777008
Target:  5'- aUGGCCCgCuACCUCCUGGcgaACAACc-- -3'
miRNA:   3'- aGCCGGG-GuUGGAGGACU---UGUUGaug -5'
21387 5' -53.9 NC_004812.1 + 86854 0.72 0.707948
Target:  5'- gCGGCCgCCAugGCUcgguUCCUGGGCGACgccgGCa -3'
miRNA:   3'- aGCCGG-GGU--UGG----AGGACUUGUUGa---UG- -5'
21387 5' -53.9 NC_004812.1 + 138545 0.72 0.707948
Target:  5'- aUGGCCCaCGcCCUCgUGAACGccucGCUGCu -3'
miRNA:   3'- aGCCGGG-GUuGGAGgACUUGU----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 142278 0.72 0.71809
Target:  5'- gCGGCUCCcgGAgCUCCUGGACGAggGCc -3'
miRNA:   3'- aGCCGGGG--UUgGAGGACUUGUUgaUG- -5'
21387 5' -53.9 NC_004812.1 + 111605 0.71 0.738138
Target:  5'- gUGGCgCCCGcgacguACCUCCUGAACuACgcgggGCg -3'
miRNA:   3'- aGCCG-GGGU------UGGAGGACUUGuUGa----UG- -5'
21387 5' -53.9 NC_004812.1 + 4132 0.71 0.767468
Target:  5'- cUCGGCCCCcGCC-CCgccGAGCAGggGCc -3'
miRNA:   3'- -AGCCGGGGuUGGaGGa--CUUGUUgaUG- -5'
21387 5' -53.9 NC_004812.1 + 58361 0.71 0.767468
Target:  5'- -gGGUCCCGGCCUCCaGGGCcGCg-- -3'
miRNA:   3'- agCCGGGGUUGGAGGaCUUGuUGaug -5'
21387 5' -53.9 NC_004812.1 + 77880 0.71 0.767468
Target:  5'- gCGGCCCgGACCUCCUcgcgccGGGCGAa--- -3'
miRNA:   3'- aGCCGGGgUUGGAGGA------CUUGUUgaug -5'
21387 5' -53.9 NC_004812.1 + 81449 0.71 0.777008
Target:  5'- -gGGCCCCAggcgaucggggGCCUCCccGACGACgGCg -3'
miRNA:   3'- agCCGGGGU-----------UGGAGGacUUGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 81809 0.73 0.677158
Target:  5'- gUCGGCCCCGGgCUCCagGAGCGugauCggGCg -3'
miRNA:   3'- -AGCCGGGGUUgGAGGa-CUUGUu---Ga-UG- -5'
21387 5' -53.9 NC_004812.1 + 87691 0.73 0.666805
Target:  5'- gUCGGCCCCA---UCCUGGcccGCAGCgGCg -3'
miRNA:   3'- -AGCCGGGGUuggAGGACU---UGUUGaUG- -5'
21387 5' -53.9 NC_004812.1 + 143557 0.73 0.646023
Target:  5'- gCGGCCCUGGCgCgCCUGGGCGACg-- -3'
miRNA:   3'- aGCCGGGGUUG-GaGGACUUGUUGaug -5'
21387 5' -53.9 NC_004812.1 + 137442 0.77 0.454706
Target:  5'- aCGGCCCCGaggacAUCUgCCUGGGCGACUucgGCg -3'
miRNA:   3'- aGCCGGGGU-----UGGA-GGACUUGUUGA---UG- -5'
21387 5' -53.9 NC_004812.1 + 103188 0.76 0.492954
Target:  5'- gCGGCCCCGGgCUCCUcGGugGccgcGCUGCg -3'
miRNA:   3'- aGCCGGGGUUgGAGGA-CUugU----UGAUG- -5'
21387 5' -53.9 NC_004812.1 + 74770 0.74 0.573356
Target:  5'- gCGGCCCCGaggGCCUCCg--GCGACUuccACg -3'
miRNA:   3'- aGCCGGGGU---UGGAGGacuUGUUGA---UG- -5'
21387 5' -53.9 NC_004812.1 + 17002 0.74 0.583666
Target:  5'- cCGGaCCaCCGGCUgcacuucgUCCUGGACGGCUGCc -3'
miRNA:   3'- aGCC-GG-GGUUGG--------AGGACUUGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 74844 0.74 0.583666
Target:  5'- cUCGGCCCCGcgGCCUCCagcGAGCGccGCaggGCg -3'
miRNA:   3'- -AGCCGGGGU--UGGAGGa--CUUGU--UGa--UG- -5'
21387 5' -53.9 NC_004812.1 + 103544 0.74 0.604387
Target:  5'- gCGGCCCUugagcGCCgCCUGGcgguGCAGCUGCc -3'
miRNA:   3'- aGCCGGGGu----UGGaGGACU----UGUUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 123903 0.74 0.625194
Target:  5'- gCGGCCCCGACgUCCgccau-GCUGCg -3'
miRNA:   3'- aGCCGGGGUUGgAGGacuuguUGAUG- -5'
21387 5' -53.9 NC_004812.1 + 16244 0.73 0.63561
Target:  5'- cCGGCCaggaCGACCUCC-GGACAgACUAUg -3'
miRNA:   3'- aGCCGGg---GUUGGAGGaCUUGU-UGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.