miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 72926 0.66 0.938395
Target:  5'- uGCAGCAGGuCGGUGGcccacgUCUccacGuCGGaCGACa -3'
miRNA:   3'- -CGUCGUCCuGCCACU------AGA----C-GUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 11931 0.66 0.938395
Target:  5'- gGCGGCGGGGCGGgGGUg-GCGGg--- -3'
miRNA:   3'- -CGUCGUCCUGCCaCUAgaCGUCguug -5'
21389 3' -54.2 NC_004812.1 + 97956 0.66 0.938395
Target:  5'- cGCAGUgguucuGGACGGcg--CUGCAGCGc- -3'
miRNA:   3'- -CGUCGu-----CCUGCCacuaGACGUCGUug -5'
21389 3' -54.2 NC_004812.1 + 139281 0.66 0.933385
Target:  5'- gGCAGC-GGACGc-GAUCgaagggcgaggUGCGGCGGCc -3'
miRNA:   3'- -CGUCGuCCUGCcaCUAG-----------ACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 147501 0.66 0.933385
Target:  5'- gGCGGCgaggGGGACGGcGAg--GCGGcCGGCg -3'
miRNA:   3'- -CGUCG----UCCUGCCaCUagaCGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 99232 0.66 0.933385
Target:  5'- gGCAGCGGGGaGGUGAagCggGCGGUcuCg -3'
miRNA:   3'- -CGUCGUCCUgCCACUa-Ga-CGUCGuuG- -5'
21389 3' -54.2 NC_004812.1 + 18435 0.66 0.933385
Target:  5'- cGCGGCGGGGgccgcgucCGGUGG-C-GCGGCGGg -3'
miRNA:   3'- -CGUCGUCCU--------GCCACUaGaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 4196 0.66 0.933385
Target:  5'- cCGGCGGGaACGGcggGGaCcGCGGCGGCg -3'
miRNA:   3'- cGUCGUCC-UGCCa--CUaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 80256 0.66 0.933385
Target:  5'- gGCGGCGGccgcggaccuGGCGGUGGcggUGCGGCGGg -3'
miRNA:   3'- -CGUCGUC----------CUGCCACUag-ACGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 33277 0.66 0.933385
Target:  5'- -aGGCGGGACGGgugUGGUgUGUuggcccGCGACu -3'
miRNA:   3'- cgUCGUCCUGCC---ACUAgACGu-----CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 80631 0.66 0.933385
Target:  5'- cGCGGUggagaGGGGCGGggaGUCcgGCAGCGGg -3'
miRNA:   3'- -CGUCG-----UCCUGCCac-UAGa-CGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 115594 0.66 0.933385
Target:  5'- cGCGGCGGG-CGGcGggCUGUAGgGGg -3'
miRNA:   3'- -CGUCGUCCuGCCaCuaGACGUCgUUg -5'
21389 3' -54.2 NC_004812.1 + 129705 0.66 0.933385
Target:  5'- cCGGCGGGaACGGcggGGaCcGCGGCGGCg -3'
miRNA:   3'- cGUCGUCC-UGCCa--CUaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 2376 0.66 0.933385
Target:  5'- -aGGCGGGACGGgugUGGUgUGUuggcccGCGACu -3'
miRNA:   3'- cgUCGUCCUGCC---ACUAgACGu-----CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 128607 0.66 0.931833
Target:  5'- -gGGCGGGGCGGgggaGGcgccgccgagcuccUCgccggGCAGCGGCg -3'
miRNA:   3'- cgUCGUCCUGCCa---CU--------------AGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 3098 0.66 0.931833
Target:  5'- -gGGCGGGGCGGgggaGGcgccgccgagcuccUCgccggGCAGCGGCg -3'
miRNA:   3'- cgUCGUCCUGCCa---CU--------------AGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 72045 0.66 0.931311
Target:  5'- -uGGgGGGGCGGggGGUCgggggcgcuggggGCGGCGGCu -3'
miRNA:   3'- cgUCgUCCUGCCa-CUAGa------------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 86734 0.66 0.928662
Target:  5'- gGCAGguGGAacCGGgGGUCcgcgucggccauggcGCAGCGGCg -3'
miRNA:   3'- -CGUCguCCU--GCCaCUAGa--------------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 146134 0.66 0.928125
Target:  5'- gGCGGCAGGAagagaaCGGcaccuUCgagaGCGGCGACg -3'
miRNA:   3'- -CGUCGUCCU------GCCacu--AGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 147410 0.66 0.927585
Target:  5'- cGCGGaacaGGGGuCGGUGuucgagcggcaggGUCUGUAGguGCg -3'
miRNA:   3'- -CGUCg---UCCU-GCCAC-------------UAGACGUCguUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.