miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 1228 0.67 0.768486
Target:  5'- cGCGgggGCuccuCCCCgcccgGGCGGCGcCGCGg- -3'
miRNA:   3'- -CGCaa-CG----GGGGa----UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 2166 0.67 0.76756
Target:  5'- gGCGgcgGCCaCCUccacggcGGCGGCGUCGuCGUc -3'
miRNA:   3'- -CGCaa-CGGgGGA-------UCGUCGCAGC-GCAc -5'
21389 5' -58.6 NC_004812.1 + 2358 0.69 0.631484
Target:  5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3'
miRNA:   3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 2418 0.66 0.813096
Target:  5'- cGCGgccaGCCCCC-AGCGcGCGcaggCGCGg- -3'
miRNA:   3'- -CGCaa--CGGGGGaUCGU-CGCa---GCGCac -5'
21389 5' -58.6 NC_004812.1 + 3832 0.66 0.818203
Target:  5'- cGCGgagGUCCCCgcgcaggcgcaugAGCAccagcGCGUCGCGc- -3'
miRNA:   3'- -CGCaa-CGGGGGa------------UCGU-----CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 4255 0.68 0.701369
Target:  5'- gGCGgcGCCCgCCgcGGCGGCGuucUCGCGc- -3'
miRNA:   3'- -CGCaaCGGG-GGa-UCGUCGC---AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 4377 0.69 0.651567
Target:  5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3'
miRNA:   3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5'
21389 5' -58.6 NC_004812.1 + 7870 0.7 0.581413
Target:  5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 10343 0.67 0.768486
Target:  5'- cGCGguucGCCgCCUcGCcGCGUCGCGc- -3'
miRNA:   3'- -CGCaa--CGGgGGAuCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 12895 0.69 0.62144
Target:  5'- aGCGgcgcucggUGCCCCCggGGCGGCG-CgGCGa- -3'
miRNA:   3'- -CGCa-------ACGGGGGa-UCGUCGCaG-CGCac -5'
21389 5' -58.6 NC_004812.1 + 15128 0.71 0.522533
Target:  5'- gGCGgcGCCCCCgacGGCGaCGUCGCa-- -3'
miRNA:   3'- -CGCaaCGGGGGa--UCGUcGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 15965 0.69 0.611404
Target:  5'- cGCGUggcGCCgCCgcGCGGCGgCGCGUc -3'
miRNA:   3'- -CGCAa--CGGgGGauCGUCGCaGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 16130 0.7 0.580417
Target:  5'- gGCGgggGCCCCCguggugggGGCGGCcgugccggcuacgGUCGCGg- -3'
miRNA:   3'- -CGCaa-CGGGGGa-------UCGUCG-------------CAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 16837 0.66 0.829889
Target:  5'- gGCGgccGCCgCCCUuaGGCGcGCGgUCGCGg- -3'
miRNA:   3'- -CGCaa-CGG-GGGA--UCGU-CGC-AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 18215 0.69 0.631484
Target:  5'- cGCGguaguagGCCaCCCgGGCGGCGUaCGCGc- -3'
miRNA:   3'- -CGCaa-----CGG-GGGaUCGUCGCA-GCGCac -5'
21389 5' -58.6 NC_004812.1 + 19112 0.66 0.829889
Target:  5'- cGCGggccagGCCCCCgc-CAGC-UCgGCGUGg -3'
miRNA:   3'- -CGCaa----CGGGGGaucGUCGcAG-CGCAC- -5'
21389 5' -58.6 NC_004812.1 + 19169 0.69 0.660588
Target:  5'- gGCGgcGCCCCC-AGaaaccuuCAGCGUCGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUC-------GUCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 20008 0.66 0.829889
Target:  5'- cGCGgcGCCgUCUccGCGcGCGUCGCGg- -3'
miRNA:   3'- -CGCaaCGGgGGAu-CGU-CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 25170 0.77 0.247434
Target:  5'- -gGUcGCCCCCgcgcuccggGGCGGCGUCGCGg- -3'
miRNA:   3'- cgCAaCGGGGGa--------UCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 25896 0.68 0.720956
Target:  5'- cGCGgcGCCCgcgcccagcgCCgcgGGCGcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGG----------GGa--UCGU-CGCAGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.