miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 30317 0.68 0.720956
Target:  5'- cGCGggcaccaggaacgGCCCCgCgagcucgaacgccAGCGGCGUCGCGUc -3'
miRNA:   3'- -CGCaa-----------CGGGG-Ga------------UCGUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 4377 0.69 0.651567
Target:  5'- gGCGc-GCgCCCUGGCcgaGGCGUCGCccggGUGg -3'
miRNA:   3'- -CGCaaCGgGGGAUCG---UCGCAGCG----CAC- -5'
21389 5' -58.6 NC_004812.1 + 81276 0.69 0.651567
Target:  5'- aCGUUGCCgUCUGGCGagaccuGCGUCGCc-- -3'
miRNA:   3'- cGCAACGGgGGAUCGU------CGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 19169 0.69 0.660588
Target:  5'- gGCGgcGCCCCC-AGaaaccuuCAGCGUCGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGaUC-------GUCGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 34677 0.68 0.671589
Target:  5'- cGCGU--CCCCC-AGCuGCGagGCGUGc -3'
miRNA:   3'- -CGCAacGGGGGaUCGuCGCagCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 32485 0.68 0.691487
Target:  5'- gGCGcgGCCCgUcGGCGGCGUacCGCGUu -3'
miRNA:   3'- -CGCaaCGGGgGaUCGUCGCA--GCGCAc -5'
21389 5' -58.6 NC_004812.1 + 36414 0.68 0.701369
Target:  5'- -gGUUGCCCgCgacGaCGGCGUUGCGUa -3'
miRNA:   3'- cgCAACGGGgGau-C-GUCGCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 129763 0.68 0.701369
Target:  5'- gGCGgcGCCCgCCgcGGCGGCGuucUCGCGc- -3'
miRNA:   3'- -CGCaaCGGG-GGa-UCGUCGC---AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 25896 0.68 0.720956
Target:  5'- cGCGgcGCCCgcgcccagcgCCgcgGGCGcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGG----------GGa--UCGU-CGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 127866 0.69 0.631484
Target:  5'- gGCGUcggGCCCggcgCgcGCGGCGUCGCGg- -3'
miRNA:   3'- -CGCAa--CGGGg---GauCGUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 76291 0.7 0.581413
Target:  5'- cGCGgccGCCUCC-AGCAGCGcggCGCGg- -3'
miRNA:   3'- -CGCaa-CGGGGGaUCGUCGCa--GCGCac -5'
21389 5' -58.6 NC_004812.1 + 7870 0.7 0.581413
Target:  5'- aGCGgcGCCCCgCgcGUcGCGUCGCGa- -3'
miRNA:   3'- -CGCaaCGGGG-GauCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 83987 0.73 0.430279
Target:  5'- cGCGgcccgGCCCuCCUugGGgGGCGUCGCGg- -3'
miRNA:   3'- -CGCaa---CGGG-GGA--UCgUCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 54500 0.72 0.456995
Target:  5'- -gGUU-CUCCC--GCAGCGUCGCGUGg -3'
miRNA:   3'- cgCAAcGGGGGauCGUCGCAGCGCAC- -5'
21389 5' -58.6 NC_004812.1 + 79358 0.72 0.484577
Target:  5'- aGCGgcGCCCCCgcgagGGCAGCGccccacaccccCGCGUc -3'
miRNA:   3'- -CGCaaCGGGGGa----UCGUCGCa----------GCGCAc -5'
21389 5' -58.6 NC_004812.1 + 122465 0.72 0.493947
Target:  5'- gGCGcggGCgCCCCUGGCgGGCGcCGgGUGg -3'
miRNA:   3'- -CGCaa-CG-GGGGAUCG-UCGCaGCgCAC- -5'
21389 5' -58.6 NC_004812.1 + 155093 0.71 0.51293
Target:  5'- gGCGgcaUGCCCUCgcGCGGCGgCGCGg- -3'
miRNA:   3'- -CGCa--ACGGGGGauCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 15128 0.71 0.522533
Target:  5'- gGCGgcGCCCCCgacGGCGaCGUCGCa-- -3'
miRNA:   3'- -CGCaaCGGGGGa--UCGUcGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 110031 0.71 0.541941
Target:  5'- cGCGUguaGUCCCCgGGCGGUG-CGCGg- -3'
miRNA:   3'- -CGCAa--CGGGGGaUCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 109946 0.7 0.581413
Target:  5'- gGCGcgGCgCCCUGGCGGcCGUgGCGcUGc -3'
miRNA:   3'- -CGCaaCGgGGGAUCGUC-GCAgCGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.