miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 5' -58.6 NC_004812.1 + 111652 0.66 0.804458
Target:  5'- uGCGc-GCCCCCU--CGGCGcUCGUGUa -3'
miRNA:   3'- -CGCaaCGGGGGAucGUCGC-AGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 80733 0.66 0.804458
Target:  5'- cGCGacccUGgCCCUggaGGCGGCGuUCGCGUu -3'
miRNA:   3'- -CGCa---ACgGGGGa--UCGUCGC-AGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 89944 0.66 0.804458
Target:  5'- aCGggGCCCgCgAGCGGCGgCGCGc- -3'
miRNA:   3'- cGCaaCGGGgGaUCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 47092 0.66 0.79567
Target:  5'- gGCGccucgGCCCCC-GGCucCGUCGCGg- -3'
miRNA:   3'- -CGCaa---CGGGGGaUCGucGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 107421 0.66 0.78674
Target:  5'- uGCGgccagGCCCaCCggccgcgcGGCGGcCGUCGCGg- -3'
miRNA:   3'- -CGCaa---CGGG-GGa-------UCGUC-GCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 68866 0.66 0.78674
Target:  5'- gGCGUU-CCCCC-GGCGgGCGUCGUu-- -3'
miRNA:   3'- -CGCAAcGGGGGaUCGU-CGCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 138279 0.66 0.78674
Target:  5'- cGCGccGCgCCCUgcgGGCGGUGgUCGCGg- -3'
miRNA:   3'- -CGCaaCGgGGGA---UCGUCGC-AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 79234 0.67 0.777675
Target:  5'- ----gGCCgCCUGGCuGGCGUCGC-UGg -3'
miRNA:   3'- cgcaaCGGgGGAUCG-UCGCAGCGcAC- -5'
21389 5' -58.6 NC_004812.1 + 147758 0.67 0.777675
Target:  5'- cGCGggGCUCCCgcgggacGCGGgGUCGCc-- -3'
miRNA:   3'- -CGCaaCGGGGGau-----CGUCgCAGCGcac -5'
21389 5' -58.6 NC_004812.1 + 94371 0.67 0.777675
Target:  5'- cGCGcugguUUGCCCUggcGGCGGCGUaCGCGg- -3'
miRNA:   3'- -CGC-----AACGGGGga-UCGUCGCA-GCGCac -5'
21389 5' -58.6 NC_004812.1 + 32129 0.67 0.768486
Target:  5'- cGCGgggGCuccuCCCCgcccgGGCGGCGcCGCGg- -3'
miRNA:   3'- -CGCaa-CG----GGGGa----UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 10343 0.67 0.768486
Target:  5'- cGCGguucGCCgCCUcGCcGCGUCGCGc- -3'
miRNA:   3'- -CGCaa--CGGgGGAuCGuCGCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 1228 0.67 0.768486
Target:  5'- cGCGgggGCuccuCCCCgcccgGGCGGCGcCGCGg- -3'
miRNA:   3'- -CGCaa-CG----GGGGa----UCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 104929 0.67 0.768486
Target:  5'- cGCGguaccgagGCCCCCUuuggauCGGgGUCGCGg- -3'
miRNA:   3'- -CGCaa------CGGGGGAuc----GUCgCAGCGCac -5'
21389 5' -58.6 NC_004812.1 + 138443 0.67 0.768486
Target:  5'- cGCGgggacccGCUCCCgacGGCGGCGuuUCGCGg- -3'
miRNA:   3'- -CGCaa-----CGGGGGa--UCGUCGC--AGCGCac -5'
21389 5' -58.6 NC_004812.1 + 59389 0.67 0.768486
Target:  5'- cGCGagGCCCCac-GCAGCG-CGUGg- -3'
miRNA:   3'- -CGCaaCGGGGgauCGUCGCaGCGCac -5'
21389 5' -58.6 NC_004812.1 + 2166 0.67 0.76756
Target:  5'- gGCGgcgGCCaCCUccacggcGGCGGCGUCGuCGUc -3'
miRNA:   3'- -CGCaa-CGGgGGA-------UCGUCGCAGC-GCAc -5'
21389 5' -58.6 NC_004812.1 + 127675 0.67 0.76756
Target:  5'- gGCGgcgGCCaCCUccacggcGGCGGCGUCGuCGUc -3'
miRNA:   3'- -CGCaa-CGGgGGA-------UCGUCGCAGC-GCAc -5'
21389 5' -58.6 NC_004812.1 + 32567 0.67 0.762915
Target:  5'- cGCG--GCCCCCcagcacacgcgcagGGCGGcCGUCGUGUa -3'
miRNA:   3'- -CGCaaCGGGGGa-------------UCGUC-GCAGCGCAc -5'
21389 5' -58.6 NC_004812.1 + 116321 0.67 0.759179
Target:  5'- cCGUUGUCgCCCUgcuGGCGGCGgCGCa-- -3'
miRNA:   3'- cGCAACGG-GGGA---UCGUCGCaGCGcac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.