miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2151 5' -51.3 NC_001362.1 + 2898 0.67 0.341472
Target:  5'- gUAGCAGGGGCguguuccaggGGGAcuGGCAGggUACc -3'
miRNA:   3'- gGUCGUCCUUG----------CCCU--CUGUCuaAUGa -5'
2151 5' -51.3 NC_001362.1 + 6715 0.67 0.30409
Target:  5'- -gAGUGGGAGUGGGGGACGGGg---- -3'
miRNA:   3'- ggUCGUCCUUGCCCUCUGUCUaauga -5'
2151 5' -51.3 NC_001362.1 + 5923 0.69 0.254046
Target:  5'- aCCAaUGGGGAuCGGGAGACAGuauggGCa -3'
miRNA:   3'- -GGUcGUCCUU-GCCCUCUGUCuaa--UGa -5'
2151 5' -51.3 NC_001362.1 + 6716 1.11 0.000134
Target:  5'- gCCAGCAGGAACGGGAGACAGAUUACUa -3'
miRNA:   3'- -GGUCGUCCUUGCCCUCUGUCUAAUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.