miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21808 3' -47.2 NC_004827.1 + 5681 0.66 0.97888
Target:  5'- aCAAACUGGCGCG-UACUGAAg---- -3'
miRNA:   3'- aGUUUGGCCGUGCgAUGGUUUauacu -5'
21808 3' -47.2 NC_004827.1 + 35962 0.66 0.969803
Target:  5'- uUCAGACCGGCAUccaCUugUAcaaaGAUAUGc -3'
miRNA:   3'- -AGUUUGGCCGUGc--GAugGU----UUAUACu -5'
21808 3' -47.2 NC_004827.1 + 38738 0.67 0.958233
Target:  5'- uUCAAACCGGCAU----CCAGAU-UGAg -3'
miRNA:   3'- -AGUUUGGCCGUGcgauGGUUUAuACU- -5'
21808 3' -47.2 NC_004827.1 + 34199 0.67 0.949017
Target:  5'- -gGAAUUGGuCGCGgUGCCAAGUAuuuUGAg -3'
miRNA:   3'- agUUUGGCC-GUGCgAUGGUUUAU---ACU- -5'
21808 3' -47.2 NC_004827.1 + 31603 0.68 0.938543
Target:  5'- uUCAcuAUCGGUuaauuGCGCUGCCAcg-GUGAa -3'
miRNA:   3'- -AGUu-UGGCCG-----UGCGAUGGUuuaUACU- -5'
21808 3' -47.2 NC_004827.1 + 40325 0.68 0.920412
Target:  5'- aUAAACCGGCACGCcucaAUCAuAUuUGGu -3'
miRNA:   3'- aGUUUGGCCGUGCGa---UGGUuUAuACU- -5'
21808 3' -47.2 NC_004827.1 + 5909 0.69 0.906707
Target:  5'- aCAuauACCGuCACGCUaACgGAAUAUGAa -3'
miRNA:   3'- aGUu--UGGCcGUGCGA-UGgUUUAUACU- -5'
21808 3' -47.2 NC_004827.1 + 40238 1.11 0.003618
Target:  5'- aUCAAACCGGCACGCUACCAAAUAUGAu -3'
miRNA:   3'- -AGUUUGGCCGUGCGAUGGUUUAUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.