miRNA: 3'- uCGGCGUGaa-UGGCgGCGCGUUAgga -5'
miRNA: 3'- uCGGCG---------------UGAa---UGGCGGCGCGUu---AGGA- -5'
miRNA: 3'- uCGGCGUGAAUGGCGGcGCGUUaGGa -5'
miRNA: 3'- -UCGGCGUGAAUGGCGGCGCGUUAGGA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21809 | 5' | -57.5 | NC_004827.1 | + | 40403 | 0.66 | 0.466597 |
|
Target: 5'- uGCCGCGCcagGCUGgCGUGCAAUa-- -3' miRNA: 3'- uCGGCGUGaa-UGGCgGCGCGUUAgga -5' |
|||||||
| 21809 | 5' | -57.5 | NC_004827.1 | + | 4295 | 0.7 | 0.271658 |
|
Target: 5'- cGCCGUaaccuuguugcguuaACUcaccACCGCCGCGCGuuguUCCUu -3' miRNA: 3'- uCGGCG---------------UGAa---UGGCGGCGCGUu---AGGA- -5' |
|||||||
| 21809 | 5' | -57.5 | NC_004827.1 | + | 24221 | 0.72 | 0.212153 |
|
Target: 5'- cGCUGCAUUUAUCGCC-CGCGA-CCa -3' miRNA: 3'- uCGGCGUGAAUGGCGGcGCGUUaGGa -5' |
|||||||
| 21809 | 5' | -57.5 | NC_004827.1 | + | 42632 | 1.07 | 0.000558 |
|
Target: 5'- aAGCCGCACUUACCGCCGCGCAAUCCUc -3' miRNA: 3'- -UCGGCGUGAAUGGCGGCGCGUUAGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home