miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21913 5' -50.8 NC_004913.1 + 7789 0.66 0.907775
Target:  5'- aUGUUGUUUCGcgcuuucaguaaGGAUGCUGCCgGUGg -3'
miRNA:   3'- -ACGACAAAGCa-----------UUUGCGGCGGaCACg -5'
21913 5' -50.8 NC_004913.1 + 57633 0.67 0.902261
Target:  5'- cGCUGg-UCGUAAGCGCCugcggaucaacGCCaccUGCu -3'
miRNA:   3'- aCGACaaAGCAUUUGCGG-----------CGGac-ACG- -5'
21913 5' -50.8 NC_004913.1 + 39019 0.67 0.895112
Target:  5'- cGCUGgcaUCaccuuUAAAUGCCGUCUG-GCg -3'
miRNA:   3'- aCGACaa-AGc----AUUUGCGGCGGACaCG- -5'
21913 5' -50.8 NC_004913.1 + 7951 0.67 0.879972
Target:  5'- uUGUUGUUUCGggGACGCUGaaaucuCCUGaugggagGCg -3'
miRNA:   3'- -ACGACAAAGCauUUGCGGC------GGACa------CG- -5'
21913 5' -50.8 NC_004913.1 + 19497 0.67 0.871994
Target:  5'- gGCUGac-CGguaAGAUGUCGCCggGUGCa -3'
miRNA:   3'- aCGACaaaGCa--UUUGCGGCGGa-CACG- -5'
21913 5' -50.8 NC_004913.1 + 1987 0.68 0.863751
Target:  5'- gGCUucagCG-GAACGCCGUCgUGUGCu -3'
miRNA:   3'- aCGAcaaaGCaUUUGCGGCGG-ACACG- -5'
21913 5' -50.8 NC_004913.1 + 26255 0.69 0.789362
Target:  5'- cGUcaUGuUUUUGgcaagAGACGCCGCCUGcugGCg -3'
miRNA:   3'- aCG--AC-AAAGCa----UUUGCGGCGGACa--CG- -5'
21913 5' -50.8 NC_004913.1 + 30560 0.71 0.670327
Target:  5'- gGCUG-UUCGUGGAUGCagaGCUUGcGCc -3'
miRNA:   3'- aCGACaAAGCAUUUGCGg--CGGACaCG- -5'
21913 5' -50.8 NC_004913.1 + 16887 1.13 0.001513
Target:  5'- cUGCUGUUUCGUAAACGCCGCCUGUGCa -3'
miRNA:   3'- -ACGACAAAGCAUUUGCGGCGGACACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.