Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21963 | 5' | -50.8 | NC_004914.1 | + | 7790 | 0.66 | 0.915068 |
Target: 5'- aUGUUGUUUCGcgcuuucaguaaGGAUGCUGCCgGUGg -3' miRNA: 3'- -ACGACAAAGCa-----------UUUGCGGCGGaCACg -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 60470 | 0.67 | 0.909827 |
Target: 5'- cGCUGg-UCGUAAGCGCCugcggaucaacGCCaccUGCu -3' miRNA: 3'- aCGACaaAGCAUUUGCGG-----------CGGac-ACG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 39019 | 0.67 | 0.903017 |
Target: 5'- cGCUGgcaUCaccuuUAAAUGCCGUCUG-GCg -3' miRNA: 3'- aCGACaa-AGc----AUUUGCGGCGGACaCG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 54784 | 0.67 | 0.903017 |
Target: 5'- cGCUGaggUCGUcGGACgGuuGCCUG-GCu -3' miRNA: 3'- aCGACaa-AGCA-UUUG-CggCGGACaCG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 19498 | 0.67 | 0.880895 |
Target: 5'- gGCUGac-CGguaAGAUGUCGCCggGUGCa -3' miRNA: 3'- aCGACaaaGCa--UUUGCGGCGGa-CACG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 1987 | 0.68 | 0.872974 |
Target: 5'- gGCUucagCG-GAACGCCGUCgUGUGCu -3' miRNA: 3'- aCGAcaaaGCaUUUGCGGCGG-ACACG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 26259 | 0.69 | 0.800846 |
Target: 5'- cGUcaUGuUUUUGgcaagAGACGCCGCCUGcugGCg -3' miRNA: 3'- aCG--AC-AAAGCa----UUUGCGGCGGACa--CG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 7952 | 0.7 | 0.738673 |
Target: 5'- uUGUUGUUUCGggGACGCUGaaaucuCCUGaUGUg -3' miRNA: 3'- -ACGACAAAGCauUUGCGGC------GGAC-ACG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 30563 | 0.71 | 0.683635 |
Target: 5'- gGCUG-UUCGUGGAUGCagaGCUUGcGCc -3' miRNA: 3'- aCGACaAAGCAUUUGCGg--CGGACaCG- -5' |
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21963 | 5' | -50.8 | NC_004914.1 | + | 16890 | 1.13 | 0.001603 |
Target: 5'- cUGCUGUUUCGUAAACGCCGCCUGUGCa -3' miRNA: 3'- -ACGACAAAGCAUUUGCGGCGGACACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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