miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21968 3' -51.9 NC_004914.1 + 45986 0.66 0.907927
Target:  5'- uUGAUUgcCAUCUGGCuGUAUaGCGUCGu -3'
miRNA:   3'- -ACUAAaaGUAGGCCG-CAUG-CGCGGUg -5'
21968 3' -51.9 NC_004914.1 + 38340 0.66 0.901093
Target:  5'- gGAUaa-UGUCCGGUGUcAUGCaGCCACc -3'
miRNA:   3'- aCUAaaaGUAGGCCGCA-UGCG-CGGUG- -5'
21968 3' -51.9 NC_004914.1 + 57296 0.66 0.88659
Target:  5'- aGAg--UC-UCCGGCGUACa-GCCAa -3'
miRNA:   3'- aCUaaaAGuAGGCCGCAUGcgCGGUg -5'
21968 3' -51.9 NC_004914.1 + 22433 0.67 0.871009
Target:  5'- gGAUUUugUCAUCCGGUG-ACgGUGCUg- -3'
miRNA:   3'- aCUAAA--AGUAGGCCGCaUG-CGCGGug -5'
21968 3' -51.9 NC_004914.1 + 3136 0.67 0.845729
Target:  5'- ---aUUUCAUCCGGUGauuUugGCGUCc- -3'
miRNA:   3'- acuaAAAGUAGGCCGC---AugCGCGGug -5'
21968 3' -51.9 NC_004914.1 + 45103 0.68 0.827699
Target:  5'- gGGUUaUCAcUCCGGCuu-UGCGCCAg -3'
miRNA:   3'- aCUAAaAGU-AGGCCGcauGCGCGGUg -5'
21968 3' -51.9 NC_004914.1 + 27017 0.69 0.758439
Target:  5'- aGAaUUUCAgcgauUCCGGUGUGauauccacCGCGCCGg -3'
miRNA:   3'- aCUaAAAGU-----AGGCCGCAU--------GCGCGGUg -5'
21968 3' -51.9 NC_004914.1 + 55351 0.7 0.715655
Target:  5'- gUGAUUUa---CCGGCGUAC-CGCCAa -3'
miRNA:   3'- -ACUAAAaguaGGCCGCAUGcGCGGUg -5'
21968 3' -51.9 NC_004914.1 + 24173 0.72 0.559894
Target:  5'- cGGUaaaCAUCgGGCGUACGcCGCCGg -3'
miRNA:   3'- aCUAaaaGUAGgCCGCAUGC-GCGGUg -5'
21968 3' -51.9 NC_004914.1 + 3800 0.74 0.48472
Target:  5'- ------gCAUCCGGCGUcgGUGCCACa -3'
miRNA:   3'- acuaaaaGUAGGCCGCAugCGCGGUG- -5'
21968 3' -51.9 NC_004914.1 + 21389 1.1 0.00215
Target:  5'- cUGAUUUUCAUCCGGCGUACGCGCCACu -3'
miRNA:   3'- -ACUAAAAGUAGGCCGCAUGCGCGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.