miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21970 3' -60.4 NC_004914.1 + 26171 0.7 0.289477
Target:  5'- gCGGCGUCUCUUGC-CAaaaaCAUGACGGu -3'
miRNA:   3'- aGUCGCGGGGGACGaGUg---GUGCUGCC- -5'
21970 3' -60.4 NC_004914.1 + 54717 0.66 0.492004
Target:  5'- cUCAGCGCCUUCUGUUgCGCCA-GAa-- -3'
miRNA:   3'- -AGUCGCGGGGGACGA-GUGGUgCUgcc -5'
21970 3' -60.4 NC_004914.1 + 57053 0.66 0.521805
Target:  5'- gCAGUG-CCCgUGCgCAgCACGACGa -3'
miRNA:   3'- aGUCGCgGGGgACGaGUgGUGCUGCc -5'
21970 3' -60.4 NC_004914.1 + 9206 0.66 0.472579
Target:  5'- gCAGCGCUgCCUGCcggaccuggcUCuCCACGA-GGu -3'
miRNA:   3'- aGUCGCGGgGGACG----------AGuGGUGCUgCC- -5'
21970 3' -60.4 NC_004914.1 + 59256 0.69 0.349017
Target:  5'- cCAGCGCgCUCUcCUgGUCACGACGGg -3'
miRNA:   3'- aGUCGCGgGGGAcGAgUGGUGCUGCC- -5'
21970 3' -60.4 NC_004914.1 + 8912 0.7 0.282621
Target:  5'- --cGCuCCCCCUGUucgcccuucUCACCACG-CGGa -3'
miRNA:   3'- aguCGcGGGGGACG---------AGUGGUGCuGCC- -5'
21970 3' -60.4 NC_004914.1 + 19447 0.73 0.175741
Target:  5'- aUCAGC-CCCCCUGCU-GCCAcCGGCa- -3'
miRNA:   3'- -AGUCGcGGGGGACGAgUGGU-GCUGcc -5'
21970 3' -60.4 NC_004914.1 + 26297 1.1 0.000366
Target:  5'- aUCAGCGCCCCCUGCUCACCACGACGGu -3'
miRNA:   3'- -AGUCGCGGGGGACGAGUGGUGCUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.