Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 2790 | 0.67 | 0.929835 |
Target: 5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3' miRNA: 3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 2882 | 0.68 | 0.897773 |
Target: 5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3' miRNA: 3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 5987 | 0.72 | 0.710026 |
Target: 5'- gCCACCGACu-CAUUACCGuGC-GUACc -3' miRNA: 3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 6046 | 0.66 | 0.940649 |
Target: 5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3' miRNA: 3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 6138 | 0.7 | 0.773948 |
Target: 5'- aCACCAcACAGCGUgACgGGgAGCugGu -3' miRNA: 3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 6296 | 0.68 | 0.865469 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 6917 | 0.67 | 0.917869 |
Target: 5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3' miRNA: 3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 7889 | 0.79 | 0.329545 |
Target: 5'- gCCACCGGCAGCAUccuUACUGaaAGCGCGa -3' miRNA: 3'- -GGUGGUUGUUGUA---AUGGCcgUCGUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 10203 | 0.66 | 0.949866 |
Target: 5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3' miRNA: 3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 10922 | 0.78 | 0.3905 |
Target: 5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3' miRNA: 3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 11138 | 0.67 | 0.929835 |
Target: 5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3' miRNA: 3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 11633 | 0.68 | 0.882979 |
Target: 5'- uUACCGGCAAac---CCGGCGGCAa- -3' miRNA: 3'- gGUGGUUGUUguaauGGCCGUCGUgc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 11929 | 0.69 | 0.858793 |
Target: 5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3' miRNA: 3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 16489 | 0.69 | 0.841423 |
Target: 5'- ---aCGACAAUAUUGCUGGCAcCACa -3' miRNA: 3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 17033 | 0.69 | 0.823136 |
Target: 5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3' miRNA: 3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 18612 | 0.75 | 0.510487 |
Target: 5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3' miRNA: 3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 19432 | 0.67 | 0.910137 |
Target: 5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3' miRNA: 3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 19537 | 0.68 | 0.875177 |
Target: 5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3' miRNA: 3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 19587 | 0.71 | 0.731783 |
Target: 5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3' miRNA: 3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5' |
|||||||
21972 | 3' | -50.5 | NC_004914.1 | + | 19614 | 0.67 | 0.923996 |
Target: 5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3' miRNA: 3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home