miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21981 5' -48.7 NC_004914.1 + 31552 0.66 0.973383
Target:  5'- uCugGaGGAUUUGUCAAUCAGCGgAa-- -3'
miRNA:   3'- -GugC-CUUAAAUAGUUGGUCGCgUggu -5'
21981 5' -48.7 NC_004914.1 + 55835 0.66 0.973383
Target:  5'- aCAgGGAug--GUCAGCCAGUgGCGgCAg -3'
miRNA:   3'- -GUgCCUuaaaUAGUUGGUCG-CGUgGU- -5'
21981 5' -48.7 NC_004914.1 + 23697 0.66 0.970235
Target:  5'- cCAUGGAGcaugUUGUCAcACCAGCGgaaUAUCAg -3'
miRNA:   3'- -GUGCCUUa---AAUAGU-UGGUCGC---GUGGU- -5'
21981 5' -48.7 NC_004914.1 + 24310 0.66 0.969241
Target:  5'- uCGCGGGAaauaaccagcggCAAauCCGGUGCACCAa -3'
miRNA:   3'- -GUGCCUUaaaua-------GUU--GGUCGCGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 58080 0.66 0.96683
Target:  5'- aGCGGcccuUUUGUCAAUCuGUcuGCGCCAg -3'
miRNA:   3'- gUGCCuu--AAAUAGUUGGuCG--CGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 4929 0.66 0.96683
Target:  5'- gGCGGAcguAUgaGUCAG-CAGCGCACgAa -3'
miRNA:   3'- gUGCCU---UAaaUAGUUgGUCGCGUGgU- -5'
21981 5' -48.7 NC_004914.1 + 57627 0.67 0.963159
Target:  5'- aGCGGAA------AGCCAGCGUauGCCAu -3'
miRNA:   3'- gUGCCUUaaauagUUGGUCGCG--UGGU- -5'
21981 5' -48.7 NC_004914.1 + 53240 0.67 0.963159
Target:  5'- uCAUGGAAaccgUUGUCAcACCGG-GCACUg -3'
miRNA:   3'- -GUGCCUUa---AAUAGU-UGGUCgCGUGGu -5'
21981 5' -48.7 NC_004914.1 + 18349 0.67 0.954986
Target:  5'- --aGGAuuggcagUAUCGuACCAGCGCAgCAg -3'
miRNA:   3'- gugCCUuaa----AUAGU-UGGUCGCGUgGU- -5'
21981 5' -48.7 NC_004914.1 + 48110 0.68 0.940563
Target:  5'- gACGGuggcgUUGUCAugcuugGCguGCGUACCAg -3'
miRNA:   3'- gUGCCuua--AAUAGU------UGguCGCGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 1062 0.68 0.940563
Target:  5'- gACGGG--UUGUCAGCCagccaaggcggGGCGUAUCGu -3'
miRNA:   3'- gUGCCUuaAAUAGUUGG-----------UCGCGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 55357 0.68 0.940563
Target:  5'- uGCGGcgug-AUUuACCGGCGUACCGc -3'
miRNA:   3'- gUGCCuuaaaUAGuUGGUCGCGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 45106 0.69 0.903618
Target:  5'- gGCGGG--UUAUCAcuCCGGCuuuGCGCCAg -3'
miRNA:   3'- gUGCCUuaAAUAGUu-GGUCG---CGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 27849 0.72 0.789293
Target:  5'- gACGGggUUUua----CAGCGCACCGg -3'
miRNA:   3'- gUGCCuuAAAuaguugGUCGCGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 22954 0.73 0.735959
Target:  5'- aAUGGAAccauUCGugcGCCAGCGCACCc -3'
miRNA:   3'- gUGCCUUaaauAGU---UGGUCGCGUGGu -5'
21981 5' -48.7 NC_004914.1 + 4823 0.74 0.63384
Target:  5'- aACGGA------CAACCGGCGCACCc -3'
miRNA:   3'- gUGCCUuaaauaGUUGGUCGCGUGGu -5'
21981 5' -48.7 NC_004914.1 + 60354 0.75 0.610819
Target:  5'- uCACGGuaauGGUUUGUugcCAGCCacAGCGCACCAu -3'
miRNA:   3'- -GUGCC----UUAAAUA---GUUGG--UCGCGUGGU- -5'
21981 5' -48.7 NC_004914.1 + 55389 1.1 0.004744
Target:  5'- gCACGGAAUUUAUCAACCAGCGCACCAa -3'
miRNA:   3'- -GUGCCUUAAAUAGUUGGUCGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.