Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 9342 | 0.68 | 0.535107 |
|
Target: 5'- cGGGGCCagCAGGucc-GGCUGGgCCGAa -3' miRNA: 3'- -CCCCGGa-GUCCcucuUUGACCaGGCU- -5' |
|||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 8896 | 0.68 | 0.524775 |
|
Target: 5'- gGGGGCCUaaaggggacCAGGGGGAua-UGGggCCa- -3' miRNA: 3'- -CCCCGGA---------GUCCCUCUuugACCa-GGcu -5' |
|||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 9105 | 0.7 | 0.435863 |
|
Target: 5'- aGGGaCCUCGuGGAGAGcCaGGUCCGGc -3' miRNA: 3'- cCCC-GGAGUcCCUCUUuGaCCAGGCU- -5' |
|||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 8798 | 0.72 | 0.309183 |
|
Target: 5'- gGGGGCUgUAGGGccu-GCUGGUCCGc -3' miRNA: 3'- -CCCCGGaGUCCCucuuUGACCAGGCu -5' |
|||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 9422 | 0.72 | 0.294576 |
|
Target: 5'- cGGGGaCCggCAGGu-GAuGCUGGUCCGGc -3' miRNA: 3'- -CCCC-GGa-GUCCcuCUuUGACCAGGCU- -5' |
|||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 9476 | 0.78 | 0.135567 |
|
Target: 5'- aGGGGagagCGGGGAGAGACcGGUCUGAc -3' miRNA: 3'- -CCCCgga-GUCCCUCUUUGaCCAGGCU- -5' |
|||||||
| 21988 | 3' | -57.4 | NC_004914.1 | + | 8680 | 1.11 | 0.000593 |
|
Target: 5'- gGGGGCCUCAGGGAGAAACUGGUCCGAa -3' miRNA: 3'- -CCCCGGAGUCCCUCUUUGACCAGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home