Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21996 | 3' | -49.4 | NC_004914.1 | + | 21233 | 0.66 | 0.967967 |
Target: 5'- uGCCGucgGCGcguUGCCACGgGCAagGCg- -3' miRNA: 3'- -CGGCua-UGU---ACGGUGUgCGUaaUGag -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 12731 | 0.66 | 0.956479 |
Target: 5'- uGCUGAUGCAgugcugguUGCCACgACGCcgggGCa- -3' miRNA: 3'- -CGGCUAUGU--------ACGGUG-UGCGuaa-UGag -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 6382 | 0.66 | 0.956479 |
Target: 5'- aGCCGGUGCAUGUUGacaGCGCGa----- -3' miRNA: 3'- -CGGCUAUGUACGGUg--UGCGUaaugag -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 19981 | 0.66 | 0.956479 |
Target: 5'- uGCCGAUGagGUG-CGCGCGCA--GCUg -3' miRNA: 3'- -CGGCUAUg-UACgGUGUGCGUaaUGAg -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 39265 | 0.67 | 0.931654 |
Target: 5'- uCCGGUACAUGgUugAaacCAUUGCUCa -3' miRNA: 3'- cGGCUAUGUACgGugUgc-GUAAUGAG- -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 56058 | 0.68 | 0.925803 |
Target: 5'- gGCCGGUAUcuucacUGCCACAgGgCGUUGCc- -3' miRNA: 3'- -CGGCUAUGu-----ACGGUGUgC-GUAAUGag -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 14128 | 0.68 | 0.913204 |
Target: 5'- gGCCGAUGuCAUG-UACACGCAUg---- -3' miRNA: 3'- -CGGCUAU-GUACgGUGUGCGUAaugag -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 51266 | 0.68 | 0.90646 |
Target: 5'- uGCUGGU---UGCaCAcCACGCAUUGCUUg -3' miRNA: 3'- -CGGCUAuguACG-GU-GUGCGUAAUGAG- -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 47430 | 0.72 | 0.752553 |
Target: 5'- cGCUGcuuauugGCAUGCCuuGCACGCGUUuacCUCg -3' miRNA: 3'- -CGGCua-----UGUACGG--UGUGCGUAAu--GAG- -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 36059 | 0.72 | 0.719778 |
Target: 5'- aGCCGA-GCGcGCCGCugGCAUUcGCaUCa -3' miRNA: 3'- -CGGCUaUGUaCGGUGugCGUAA-UG-AG- -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 55761 | 0.76 | 0.527562 |
Target: 5'- uCCGGUGCAgaaGCCACAgGCGUcacaacacUGCUCu -3' miRNA: 3'- cGGCUAUGUa--CGGUGUgCGUA--------AUGAG- -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 1598 | 0.77 | 0.473696 |
Target: 5'- uGCCGAUGCAUGCCGccUugGCAaUAUg- -3' miRNA: 3'- -CGGCUAUGUACGGU--GugCGUaAUGag -5' |
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21996 | 3' | -49.4 | NC_004914.1 | + | 35934 | 1.14 | 0.0021 |
Target: 5'- aGCCGAUACAUGCCACACGCAUUACUCa -3' miRNA: 3'- -CGGCUAUGUACGGUGUGCGUAAUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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