miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22021 3' -51.5 NC_004927.1 + 40885 0.66 0.957137
Target:  5'- ----gACGagaCCGGGG-GUucaaAUCCCCCc -3'
miRNA:   3'- gaaaaUGC---GGCCCCuCAua--UAGGGGG- -5'
22021 3' -51.5 NC_004927.1 + 3032 0.68 0.871999
Target:  5'- --cUUACGCuacugaggcccuucCGGGGAGUcgAaCCCCg -3'
miRNA:   3'- gaaAAUGCG--------------GCCCCUCAuaUaGGGGg -5'
22021 3' -51.5 NC_004927.1 + 38877 0.68 0.896527
Target:  5'- aCUUcgGCaGUCGGGGuGaUGUGUUCCUCg -3'
miRNA:   3'- -GAAaaUG-CGGCCCCuC-AUAUAGGGGG- -5'
22021 3' -51.5 NC_004927.1 + 17674 0.69 0.832492
Target:  5'- ---aUACGCC-GGGAGaAUuUCUCCCa -3'
miRNA:   3'- gaaaAUGCGGcCCCUCaUAuAGGGGG- -5'
22021 3' -51.5 NC_004927.1 + 37714 0.71 0.755196
Target:  5'- ----cACGCCGGGccGAG----UCCCCCg -3'
miRNA:   3'- gaaaaUGCGGCCC--CUCauauAGGGGG- -5'
22021 3' -51.5 NC_004927.1 + 32548 0.71 0.765412
Target:  5'- ----gGCGUCGGGGAagc-GUUCCCCa -3'
miRNA:   3'- gaaaaUGCGGCCCCUcauaUAGGGGG- -5'
22021 3' -51.5 NC_004927.1 + 31181 0.75 0.497248
Target:  5'- ---aUACGCCGGGGAcucuccccgGUAU-UCCUCCu -3'
miRNA:   3'- gaaaAUGCGGCCCCU---------CAUAuAGGGGG- -5'
22021 3' -51.5 NC_004927.1 + 720 1.14 0.001923
Target:  5'- cCUUUUACGCCGGGGAGUAUAUCCCCCg -3'
miRNA:   3'- -GAAAAUGCGGCCCCUCAUAUAGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.