miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22067 5' -53.6 NC_004927.1 + 31693 0.66 0.895617
Target:  5'- gCGACCAUaucACCgUUCAggaaAGCCGCc -3'
miRNA:   3'- gGCUGGUGcu-UGGgAAGUag--UCGGUG- -5'
22067 5' -53.6 NC_004927.1 + 69163 0.66 0.895617
Target:  5'- uCCGuAUCACGGACaCCUUCuugcgaaaGGUCGCu -3'
miRNA:   3'- -GGC-UGGUGCUUG-GGAAGuag-----UCGGUG- -5'
22067 5' -53.6 NC_004927.1 + 34239 0.66 0.894921
Target:  5'- -aGGCCgcucgggGCGAagcGCCCUUCggcgugccGUCAGuCCACg -3'
miRNA:   3'- ggCUGG-------UGCU---UGGGAAG--------UAGUC-GGUG- -5'
22067 5' -53.6 NC_004927.1 + 45250 0.66 0.873635
Target:  5'- uUCGuCCACGAccuCCCUcuccUCGUCGGUUAa -3'
miRNA:   3'- -GGCuGGUGCUu--GGGA----AGUAGUCGGUg -5'
22067 5' -53.6 NC_004927.1 + 55008 0.66 0.857761
Target:  5'- gCUGACgGCc-ACCCUUCggaguGUCAGuCCACg -3'
miRNA:   3'- -GGCUGgUGcuUGGGAAG-----UAGUC-GGUG- -5'
22067 5' -53.6 NC_004927.1 + 40217 0.67 0.849477
Target:  5'- aCGAUUggGAACCCgaccUCGaacUCAGCCAg -3'
miRNA:   3'- gGCUGGugCUUGGGa---AGU---AGUCGGUg -5'
22067 5' -53.6 NC_004927.1 + 13654 0.68 0.804916
Target:  5'- gCCG-CCAUGAACUCggacauUUCAUCgaAGCUACu -3'
miRNA:   3'- -GGCuGGUGCUUGGG------AAGUAG--UCGGUG- -5'
22067 5' -53.6 NC_004927.1 + 36447 0.68 0.795439
Target:  5'- uUCGACCACG-GCCCgagCG--AGCCAUu -3'
miRNA:   3'- -GGCUGGUGCuUGGGaa-GUagUCGGUG- -5'
22067 5' -53.6 NC_004927.1 + 2573 0.71 0.639464
Target:  5'- cCCGACCuCGAAgCUUUCcgUAGCCu- -3'
miRNA:   3'- -GGCUGGuGCUUgGGAAGuaGUCGGug -5'
22067 5' -53.6 NC_004927.1 + 60343 0.71 0.596178
Target:  5'- cCCGACaACGAGCCUguuagCAUCgAGUCGCu -3'
miRNA:   3'- -GGCUGgUGCUUGGGaa---GUAG-UCGGUG- -5'
22067 5' -53.6 NC_004927.1 + 60919 0.71 0.596178
Target:  5'- aCGACCauccgggucaACGAacaGCCCUUCAUCGGgCGu -3'
miRNA:   3'- gGCUGG----------UGCU---UGGGAAGUAGUCgGUg -5'
22067 5' -53.6 NC_004927.1 + 14952 0.73 0.48099
Target:  5'- aCCGACC-CGAACCCgaacgUAUCcGUCACc -3'
miRNA:   3'- -GGCUGGuGCUUGGGaa---GUAGuCGGUG- -5'
22067 5' -53.6 NC_004927.1 + 37277 1.13 0.001272
Target:  5'- aCCGACCACGAACCCUUCAUCAGCCACa -3'
miRNA:   3'- -GGCUGGUGCUUGGGAAGUAGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.