miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22398 5' -61.5 NC_005056.1 + 9103 0.66 0.279111
Target:  5'- uGGCGCGUaggGUGuGCCGUccgGGGCuuucuguGCCAUCa -3'
miRNA:   3'- -CCGCGCG---UAC-CGGCG---UUCG-------CGGUGGa -5'
22398 5' -61.5 NC_005056.1 + 11205 0.66 0.265892
Target:  5'- aGGCGUGCAgcgugucgagcUGGCCGCA----CCACUg -3'
miRNA:   3'- -CCGCGCGU-----------ACCGGCGUucgcGGUGGa -5'
22398 5' -61.5 NC_005056.1 + 8647 0.67 0.233527
Target:  5'- cGGUGCugGCGUGGCUGCGGGaaaaucaGCCcgacaucaugACCa -3'
miRNA:   3'- -CCGCG--CGUACCGGCGUUCg------CGG----------UGGa -5'
22398 5' -61.5 NC_005056.1 + 4615 0.67 0.221538
Target:  5'- cGGCGCGCGUGaugaGCAAG-GUCACUg -3'
miRNA:   3'- -CCGCGCGUACcgg-CGUUCgCGGUGGa -5'
22398 5' -61.5 NC_005056.1 + 8040 0.67 0.210077
Target:  5'- aGGCGCGCAggcUGGCguuuucaugcuuCGCcAGaaacagcccCGCCACCg -3'
miRNA:   3'- -CCGCGCGU---ACCG------------GCGuUC---------GCGGUGGa -5'
22398 5' -61.5 NC_005056.1 + 8244 0.68 0.178724
Target:  5'- uGUGCGCc-GGuuGCAccAGCGCCcgGCCUg -3'
miRNA:   3'- cCGCGCGuaCCggCGU--UCGCGG--UGGA- -5'
22398 5' -61.5 NC_005056.1 + 12687 0.7 0.143415
Target:  5'- cGGCuuuCGuUAUGGCCGCGAuUGCCGCCc -3'
miRNA:   3'- -CCGc--GC-GUACCGGCGUUcGCGGUGGa -5'
22398 5' -61.5 NC_005056.1 + 1289 0.72 0.090731
Target:  5'- gGGCGUGCAUGGUCGCccaggcgaggucGGCGUgGCUg -3'
miRNA:   3'- -CCGCGCGUACCGGCGu-----------UCGCGgUGGa -5'
22398 5' -61.5 NC_005056.1 + 20704 0.73 0.081346
Target:  5'- gGGCGgGCGUGGCCGUugcuGGaUGgCACCg -3'
miRNA:   3'- -CCGCgCGUACCGGCGu---UC-GCgGUGGa -5'
22398 5' -61.5 NC_005056.1 + 27770 0.73 0.079034
Target:  5'- -aCGCGuCGaGGCUGCAcGCGCCGCCg -3'
miRNA:   3'- ccGCGC-GUaCCGGCGUuCGCGGUGGa -5'
22398 5' -61.5 NC_005056.1 + 21903 0.73 0.072471
Target:  5'- cGGCGCGCAUGGCCu---GCGCUuucguggcauauACCg -3'
miRNA:   3'- -CCGCGCGUACCGGcguuCGCGG------------UGGa -5'
22398 5' -61.5 NC_005056.1 + 5865 0.74 0.06268
Target:  5'- gGGCGCGgGUGGCCGCuuuGGGCuGCgGCUc -3'
miRNA:   3'- -CCGCGCgUACCGGCG---UUCG-CGgUGGa -5'
22398 5' -61.5 NC_005056.1 + 5596 1.08 0.000124
Target:  5'- gGGCGCGCAUGGCCGCAAGCGCCACCUc -3'
miRNA:   3'- -CCGCGCGUACCGGCGUUCGCGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.