miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22525	3'	-37.8	NC_005083.1	+	147264	0.76	1
	Target:  5'- uCUCAAGGUGGUgUacgUGGCGGUGcUGCg -3' miRNA:   3'- -GAGUUUUAUCAgAaa-AUUGUCAC-AUG- -5'
22525	3'	-37.8	NC_005083.1	+	54255	0.72	1
	Target:  5'- uCUCGAuuguGUGGUCUUUgcuuucAACAGUcgcGUGCa -3' miRNA:   3'- -GAGUUu---UAUCAGAAAa-----UUGUCA---CAUG- -5'
22525	3'	-37.8	NC_005083.1	+	132443	0.67	1
	Target:  5'- gUCAAAAUAGUCaacgacgUUuuCAGUGUu- -3' miRNA:   3'- gAGUUUUAUCAGaa-----AAuuGUCACAug -5'
22525	3'	-37.8	NC_005083.1	+	122051	0.66	1
	Target:  5'- gUUAAAGUGGUCgc---ACAGcgGUACa -3' miRNA:   3'- gAGUUUUAUCAGaaaauUGUCa-CAUG- -5'
22525	3'	-37.8	NC_005083.1	+	83828	0.66	1
	Target:  5'- -cCGAAAUGGUCacgaacAGCAGUGUuaGCc -3' miRNA:   3'- gaGUUUUAUCAGaaaa--UUGUCACA--UG- -5'
22525	3'	-37.8	NC_005083.1	+	46599	0.67	1
	Target:  5'- aCUCu---UGGUCUgucUGACAuuuGUGUACg -3' miRNA:   3'- -GAGuuuuAUCAGAaa-AUUGU---CACAUG- -5'
22525	3'	-37.8	NC_005083.1	+	100434	0.67	1
	Target:  5'- gCUCAGAAgaaAGUCgua-AAUGGUGUAUa -3' miRNA:   3'- -GAGUUUUa--UCAGaaaaUUGUCACAUG- -5'
22525	3'	-37.8	NC_005083.1	+	184888	0.68	1
	Target:  5'- uUCccuAGAUAGUCagUUUGAUAGcGUGCa -3' miRNA:   3'- gAGu--UUUAUCAGa-AAAUUGUCaCAUG- -5'
22525	3'	-37.8	NC_005083.1	+	52292	0.71	1
	Target:  5'- uCUUGAAAUAagacgUUGACAGUGUGCa -3' miRNA:   3'- -GAGUUUUAUcagaaAAUUGUCACAUG- -5'
22525	3'	-37.8	NC_005083.1	+	161651	0.73	1
	Target:  5'- -cCGAGAUAGguugCUguggUAGCAGUGUAg -3' miRNA:   3'- gaGUUUUAUCa---GAaa--AUUGUCACAUg -5'
22525	3'	-37.8	NC_005083.1	+	52599	1.15	0.155075
	Target:  5'- uCUCAAAAUAGUCUUUUAACAGUGUACa -3' miRNA:   3'- -GAGUUUUAUCAGAAAAUUGUCACAUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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