miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22535 3' -53.6 NC_005083.1 + 240936 0.66 0.990027
Target:  5'- cCUGcACCAgCCGaua--GAGCUUGGUg -3'
miRNA:   3'- -GACuUGGUgGGCgucaaCUCGAACCG- -5'
22535 3' -53.6 NC_005083.1 + 56816 0.66 0.990027
Target:  5'- uUGAACCACUguCAcUUGAGCUUGaGUa -3'
miRNA:   3'- gACUUGGUGGgcGUcAACUCGAAC-CG- -5'
22535 3' -53.6 NC_005083.1 + 163595 0.66 0.983495
Target:  5'- -cGAGCCgaaguauACCC-CAGUUGuaaaugcGGCUUGGUc -3'
miRNA:   3'- gaCUUGG-------UGGGcGUCAAC-------UCGAACCG- -5'
22535 3' -53.6 NC_005083.1 + 187981 0.67 0.979867
Target:  5'- cCUGAGCCGaaaagagaaGCAGUUGAcGCaagGGCa -3'
miRNA:   3'- -GACUUGGUggg------CGUCAACU-CGaa-CCG- -5'
22535 3' -53.6 NC_005083.1 + 20703 0.67 0.975175
Target:  5'- -cGAAUCAUUgGCGaaaaGAGCUUGGCa -3'
miRNA:   3'- gaCUUGGUGGgCGUcaa-CUCGAACCG- -5'
22535 3' -53.6 NC_005083.1 + 69664 0.67 0.975175
Target:  5'- uUGAuACCAgCCGCGacuaucAGCUUGGCa -3'
miRNA:   3'- gACU-UGGUgGGCGUcaac--UCGAACCG- -5'
22535 3' -53.6 NC_005083.1 + 89803 0.67 0.975175
Target:  5'- uCUGAGCCGCuuGCAGcacGcGCUUGauauGCa -3'
miRNA:   3'- -GACUUGGUGggCGUCaa-CuCGAAC----CG- -5'
22535 3' -53.6 NC_005083.1 + 203298 0.69 0.94841
Target:  5'- uCUGccaauAGCCACCUGCAaaaGGGCgUGGCg -3'
miRNA:   3'- -GAC-----UUGGUGGGCGUcaaCUCGaACCG- -5'
22535 3' -53.6 NC_005083.1 + 141257 0.71 0.887968
Target:  5'- uUGAAUgGCuuGCuGaagaccguaUUGAGCUUGGCg -3'
miRNA:   3'- gACUUGgUGggCGuC---------AACUCGAACCG- -5'
22535 3' -53.6 NC_005083.1 + 74114 0.75 0.676813
Target:  5'- gCUGAugaaAUCGCUauCGguGUUGAGCUUGGUg -3'
miRNA:   3'- -GACU----UGGUGG--GCguCAACUCGAACCG- -5'
22535 3' -53.6 NC_005083.1 + 203332 1.13 0.004183
Target:  5'- cCUGAACCACCCGCAGUUGAGCUUGGCg -3'
miRNA:   3'- -GACUUGGUGGGCGUCAACUCGAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.