miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22556 5' -56.3 NC_005091.1 + 637 0.68 0.541873
Target:  5'- aUCgCGCuGAACgCGGAGaauCGACCGG-GCa -3'
miRNA:   3'- -AG-GCGuCUUG-GCCUCg--GUUGGUCaCG- -5'
22556 5' -56.3 NC_005091.1 + 29149 0.69 0.500087
Target:  5'- -aCGCGuGAACUGGcGCaggaauucauCGGCCAGUGCg -3'
miRNA:   3'- agGCGU-CUUGGCCuCG----------GUUGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 53175 0.69 0.479731
Target:  5'- -gCGCGGG--CGcGAGCCuuCCGGUGCa -3'
miRNA:   3'- agGCGUCUugGC-CUCGGuuGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 16408 0.69 0.478724
Target:  5'- gCgGCGGGAuuCCGGAcgcaccgaacaacGCCAACCAGUacacGCg -3'
miRNA:   3'- aGgCGUCUU--GGCCU-------------CGGUUGGUCA----CG- -5'
22556 5' -56.3 NC_005091.1 + 55137 0.69 0.469706
Target:  5'- cCCGCGcacGGGCCGcgucgaacGAGCCGACCGGggGUu -3'
miRNA:   3'- aGGCGU---CUUGGC--------CUCGGUUGGUCa-CG- -5'
22556 5' -56.3 NC_005091.1 + 28953 0.69 0.459788
Target:  5'- -gUGCAGGGCUGG-GUCAACCA-UGCu -3'
miRNA:   3'- agGCGUCUUGGCCuCGGUUGGUcACG- -5'
22556 5' -56.3 NC_005091.1 + 26434 0.7 0.449983
Target:  5'- -gCGCGGGccGCCGGGGCUgccaucguagcGGCCGG-GCg -3'
miRNA:   3'- agGCGUCU--UGGCCUCGG-----------UUGGUCaCG- -5'
22556 5' -56.3 NC_005091.1 + 25208 0.7 0.421279
Target:  5'- gCCGCuGcACCGGGGUCGaugcaGCCGGcGCg -3'
miRNA:   3'- aGGCGuCuUGGCCUCGGU-----UGGUCaCG- -5'
22556 5' -56.3 NC_005091.1 + 8668 0.71 0.384781
Target:  5'- -gCGCAGAcauCCGGGGCaCGcuguUCAGUGCa -3'
miRNA:   3'- agGCGUCUu--GGCCUCG-GUu---GGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 56946 0.73 0.310658
Target:  5'- -aCGCAGAG-CGG-GCCGGCC-GUGCa -3'
miRNA:   3'- agGCGUCUUgGCCuCGGUUGGuCACG- -5'
22556 5' -56.3 NC_005091.1 + 4667 0.74 0.241624
Target:  5'- cUCCGCGcgucguuuuGGGCCGGGGCCGucGCUGGUaGCu -3'
miRNA:   3'- -AGGCGU---------CUUGGCCUCGGU--UGGUCA-CG- -5'
22556 5' -56.3 NC_005091.1 + 38231 0.75 0.217803
Target:  5'- cCCgGCAGGGCCaGcGCCAugUAGUGCg -3'
miRNA:   3'- aGG-CGUCUUGGcCuCGGUugGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 10046 0.77 0.171026
Target:  5'- aCCGgAcgaggaucGAGCCGGGGCCGuaauacuGCCGGUGCu -3'
miRNA:   3'- aGGCgU--------CUUGGCCUCGGU-------UGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 44427 0.78 0.13052
Target:  5'- aCCGUAGAgGCCGGGaacGCUuGCCGGUGCa -3'
miRNA:   3'- aGGCGUCU-UGGCCU---CGGuUGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 2684 1.13 0.000445
Target:  5'- aUCCGCAGAACCGGAGCCAACCAGUGCg -3'
miRNA:   3'- -AGGCGUCUUGGCCUCGGUUGGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.