miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22732 5' -53.6 NC_005091.1 + 10419 0.66 0.811373
Target:  5'- cAGGGGcuGACC--GUGA-GCGgCCGCa -3'
miRNA:   3'- aUCCCCauUUGGgaUACUaCGC-GGCG- -5'
22732 5' -53.6 NC_005091.1 + 28928 0.66 0.801685
Target:  5'- aAGGGGacaaGAACCCgaccgAUGAaGCGUauCGCc -3'
miRNA:   3'- aUCCCCa---UUUGGGa----UACUaCGCG--GCG- -5'
22732 5' -53.6 NC_005091.1 + 16626 0.66 0.791813
Target:  5'- cGGGGGcUGGACuCCUGU--UGCGaCCGg -3'
miRNA:   3'- aUCCCC-AUUUG-GGAUAcuACGC-GGCg -5'
22732 5' -53.6 NC_005091.1 + 16232 0.67 0.729365
Target:  5'- cAGGGacgAGGCCgccggcaUGcGAUGCGCCGCu -3'
miRNA:   3'- aUCCCca-UUUGGg------AUaCUACGCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 55168 0.67 0.718532
Target:  5'- cGGGGGUuacuucacAACCCUAgccgGAcccccgGuCGCCGCc -3'
miRNA:   3'- aUCCCCAu-------UUGGGAUa---CUa-----C-GCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 9678 0.68 0.696614
Target:  5'- cGGGGGUAaaggauauugagAAUCaggAUGGUaGCGCCGUu -3'
miRNA:   3'- aUCCCCAU------------UUGGga-UACUA-CGCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 2651 0.69 0.640885
Target:  5'- -cGGGGaAGACCCguUGucgcagGUGCCGCu -3'
miRNA:   3'- auCCCCaUUUGGGauACua----CGCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 48793 0.69 0.640885
Target:  5'- -cGGGGauucGGACCuagCUGUGAgacGCGCUGCg -3'
miRNA:   3'- auCCCCa---UUUGG---GAUACUa--CGCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 4503 0.72 0.447553
Target:  5'- cGGGGGUucaaccgguugaagcGGCCC-AUGAacUGCGCCGUu -3'
miRNA:   3'- aUCCCCAu--------------UUGGGaUACU--ACGCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 41505 0.73 0.398272
Target:  5'- gUGGGGGUucuUCUUcGUGAUGCGuuGCg -3'
miRNA:   3'- -AUCCCCAuuuGGGA-UACUACGCggCG- -5'
22732 5' -53.6 NC_005091.1 + 47292 0.73 0.379917
Target:  5'- aGGGGGUAGACCCguacaacacGAUaaacacCGCCGCa -3'
miRNA:   3'- aUCCCCAUUUGGGaua------CUAc-----GCGGCG- -5'
22732 5' -53.6 NC_005091.1 + 54913 1.09 0.001329
Target:  5'- cUAGGGGUAAACCCUAUGAUGCGCCGCc -3'
miRNA:   3'- -AUCCCCAUUUGGGAUACUACGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.