miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22739 3' -53.3 NC_005091.1 + 26028 0.66 0.843243
Target:  5'- cCGACGUACgcc---GUGGCgaGCGCGa -3'
miRNA:   3'- -GCUGCGUGacuuucUACCGgaCGUGC- -5'
22739 3' -53.3 NC_005091.1 + 17465 0.66 0.83343
Target:  5'- aCGGCGauuugcauuccuuCGCUGAAcucGGAcgGGUCUGCGCc -3'
miRNA:   3'- -GCUGC-------------GUGACUU---UCUa-CCGGACGUGc -5'
22739 3' -53.3 NC_005091.1 + 53529 0.66 0.825205
Target:  5'- gGGCGCGgcuuuCUGGcGGGAUGGUCuaagggcgaaUGCACGg -3'
miRNA:   3'- gCUGCGU-----GACU-UUCUACCGG----------ACGUGC- -5'
22739 3' -53.3 NC_005091.1 + 11855 0.66 0.825205
Target:  5'- aGAUGC--UGAAGGAcUGGCC-GCACu -3'
miRNA:   3'- gCUGCGugACUUUCU-ACCGGaCGUGc -5'
22739 3' -53.3 NC_005091.1 + 8229 0.66 0.825205
Target:  5'- gGACGUGCUGAucGcgGuaCUGgGCGg -3'
miRNA:   3'- gCUGCGUGACUuuCuaCcgGACgUGC- -5'
22739 3' -53.3 NC_005091.1 + 32569 0.66 0.815868
Target:  5'- aCGAUGCGCUGAAccucgGGCUgauUGaCGCGg -3'
miRNA:   3'- -GCUGCGUGACUUucua-CCGG---AC-GUGC- -5'
22739 3' -53.3 NC_005091.1 + 4163 0.66 0.814924
Target:  5'- aGcCGUcaggucgGCUGGGAGAUGGCCga-GCGg -3'
miRNA:   3'- gCuGCG-------UGACUUUCUACCGGacgUGC- -5'
22739 3' -53.3 NC_005091.1 + 24276 0.66 0.806334
Target:  5'- aCGACGUGCUGAAAGA--GCgaGCGg- -3'
miRNA:   3'- -GCUGCGUGACUUUCUacCGgaCGUgc -5'
22739 3' -53.3 NC_005091.1 + 3357 0.67 0.786716
Target:  5'- --uCGCACUGAAGGccGGUgUGCAa- -3'
miRNA:   3'- gcuGCGUGACUUUCuaCCGgACGUgc -5'
22739 3' -53.3 NC_005091.1 + 34057 0.67 0.766438
Target:  5'- gGACGCGCUGAAGGcguacGUcGGCg-GUGCGa -3'
miRNA:   3'- gCUGCGUGACUUUC-----UA-CCGgaCGUGC- -5'
22739 3' -53.3 NC_005091.1 + 28269 0.67 0.745595
Target:  5'- gCGACGCGCUGGc----GGCUUGCGUGa -3'
miRNA:   3'- -GCUGCGUGACUuucuaCCGGACGUGC- -5'
22739 3' -53.3 NC_005091.1 + 8761 0.68 0.691632
Target:  5'- aCGAgUGCACUGAAcagcgugccccGGAU-GUCUGCGCGc -3'
miRNA:   3'- -GCU-GCGUGACUU-----------UCUAcCGGACGUGC- -5'
22739 3' -53.3 NC_005091.1 + 31792 0.69 0.636192
Target:  5'- uCGGCGCAgccGAAGgcGGCCgGCGCGg -3'
miRNA:   3'- -GCUGCGUgacUUUCuaCCGGaCGUGC- -5'
22739 3' -53.3 NC_005091.1 + 56949 0.7 0.613915
Target:  5'- gCGACGCAgaGcgGGccGGCCgUGCACu -3'
miRNA:   3'- -GCUGCGUgaCuuUCuaCCGG-ACGUGc -5'
22739 3' -53.3 NC_005091.1 + 28696 0.71 0.56414
Target:  5'- gGGCGCACgacacacgccggGGCCUGCGCGc -3'
miRNA:   3'- gCUGCGUGacuuucua----CCGGACGUGC- -5'
22739 3' -53.3 NC_005091.1 + 2065 0.71 0.536929
Target:  5'- uCGACGCACUGGucgaacAGAUuacccGUCUGCACa -3'
miRNA:   3'- -GCUGCGUGACUu-----UCUAc----CGGACGUGc -5'
22739 3' -53.3 NC_005091.1 + 23499 0.71 0.526169
Target:  5'- gCGACGCGCgcggcGAUGGCgCUGCuCGg -3'
miRNA:   3'- -GCUGCGUGacuuuCUACCG-GACGuGC- -5'
22739 3' -53.3 NC_005091.1 + 38050 0.72 0.504904
Target:  5'- aGACGCACgaAGAGAUcGuCCUGCGCGu -3'
miRNA:   3'- gCUGCGUGacUUUCUAcC-GGACGUGC- -5'
22739 3' -53.3 NC_005091.1 + 37125 0.72 0.47373
Target:  5'- cCGGCGCAgUGcggGAAGAcugaUGGCCUGCuACu -3'
miRNA:   3'- -GCUGCGUgAC---UUUCU----ACCGGACG-UGc -5'
22739 3' -53.3 NC_005091.1 + 29245 0.75 0.326584
Target:  5'- uGACGCACUGGccGAUGaauuCCUGCGCc -3'
miRNA:   3'- gCUGCGUGACUuuCUACc---GGACGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.