miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22821 3' -50.9 NC_005135.1 + 58002 0.66 0.993682
Target:  5'- aGACC-CGGUuca-UCACcg-GGCCAGg -3'
miRNA:   3'- -CUGGaGCCGuuuaAGUGauaCCGGUC- -5'
22821 3' -50.9 NC_005135.1 + 12364 0.66 0.992598
Target:  5'- aACCUUGGCucuugugaAAcgUCAUUgcaccgaGUGGCCGGa -3'
miRNA:   3'- cUGGAGCCG--------UUuaAGUGA-------UACCGGUC- -5'
22821 3' -50.9 NC_005135.1 + 130642 0.66 0.990382
Target:  5'- aACUUCGGCAAAgugUGCUGUgcaGGUCGGc -3'
miRNA:   3'- cUGGAGCCGUUUaa-GUGAUA---CCGGUC- -5'
22821 3' -50.9 NC_005135.1 + 129512 0.66 0.990382
Target:  5'- uGCaCUUGGCAAuaaaAC-AUGGCCAGg -3'
miRNA:   3'- cUG-GAGCCGUUuaagUGaUACCGGUC- -5'
22821 3' -50.9 NC_005135.1 + 22722 0.67 0.982042
Target:  5'- uAUCUaCGGCAGAUUCugUGUG-CCGa -3'
miRNA:   3'- cUGGA-GCCGUUUAAGugAUACcGGUc -5'
22821 3' -50.9 NC_005135.1 + 157304 0.68 0.972158
Target:  5'- gGAgCUCGGC-AAUUCAUcAUGGUgAGa -3'
miRNA:   3'- -CUgGAGCCGuUUAAGUGaUACCGgUC- -5'
22821 3' -50.9 NC_005135.1 + 18718 0.69 0.962523
Target:  5'- cGCUUUGGCAAuUUCAUUcgAUGGCuCAGu -3'
miRNA:   3'- cUGGAGCCGUUuAAGUGA--UACCG-GUC- -5'
22821 3' -50.9 NC_005135.1 + 123481 0.72 0.886167
Target:  5'- uGACCUCGGUAGAgugUCAUUccuuuugguauacgAaGGCCAGc -3'
miRNA:   3'- -CUGGAGCCGUUUa--AGUGA--------------UaCCGGUC- -5'
22821 3' -50.9 NC_005135.1 + 129104 0.72 0.866016
Target:  5'- cGGCCUCGGCAAuaaaUCACUgaAUGGUa-- -3'
miRNA:   3'- -CUGGAGCCGUUua--AGUGA--UACCGguc -5'
22821 3' -50.9 NC_005135.1 + 27128 1.1 0.00829
Target:  5'- uGACCUCGGCAAAUUCACUAUGGCCAGa -3'
miRNA:   3'- -CUGGAGCCGUUUAAGUGAUACCGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.