miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22830 5' -48.7 NC_005135.1 + 105674 0.67 0.997375
Target:  5'- -----gUUGCCAGcaccacGGC-CAGUUUGGCg -3'
miRNA:   3'- aagguaAACGGUU------UCGcGUCAAACCG- -5'
22830 5' -48.7 NC_005135.1 + 105275 0.67 0.994891
Target:  5'- -aCCAUUgaaGCCuu-GaCGCAGUUcGGCg -3'
miRNA:   3'- aaGGUAAa--CGGuuuC-GCGUCAAaCCG- -5'
22830 5' -48.7 NC_005135.1 + 75354 0.68 0.994038
Target:  5'- -aUCGUUuaauggguucUGCCAAAGCGUA-UUUGGUa -3'
miRNA:   3'- aaGGUAA----------ACGGUUUCGCGUcAAACCG- -5'
22830 5' -48.7 NC_005135.1 + 1149 0.71 0.950229
Target:  5'- cUUCCAUgaucgacaGCCAAAGCGUc-UUUGGCc -3'
miRNA:   3'- -AAGGUAaa------CGGUUUCGCGucAAACCG- -5'
22830 5' -48.7 NC_005135.1 + 95217 0.72 0.945659
Target:  5'- aUCCugaaaauaugGUUUGCCAucGCGCuGUcgGGCc -3'
miRNA:   3'- aAGG----------UAAACGGUuuCGCGuCAaaCCG- -5'
22830 5' -48.7 NC_005135.1 + 86729 0.72 0.924685
Target:  5'- cUUCgGUUUGauCCAAAGCGCGGguuaUUGGUu -3'
miRNA:   3'- -AAGgUAAAC--GGUUUCGCGUCa---AACCG- -5'
22830 5' -48.7 NC_005135.1 + 18151 0.74 0.865054
Target:  5'- gUUCGUUaagGCCAuugcagaagaauuGCGCGGUUUGGCa -3'
miRNA:   3'- aAGGUAAa--CGGUuu-----------CGCGUCAAACCG- -5'
22830 5' -48.7 NC_005135.1 + 16288 1.1 0.01054
Target:  5'- uUUCCAUUUGCCAAAGCGCAGUUUGGCu -3'
miRNA:   3'- -AAGGUAAACGGUUUCGCGUCAAACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.