miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 118105 0.68 0.878289
Target:  5'- cGCGUGCGGUGCAacaa-GGUGCGCa- -3'
miRNA:   3'- -CGUGCGCCGCGUauuuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 76202 0.7 0.821629
Target:  5'- uUugGUGGCGCuuuuUAuguacguugcGGUAGCGCuGCGAg -3'
miRNA:   3'- cGugCGCCGCGu---AU----------UUAUCGCG-CGCU- -5'
22855 3' -53.5 NC_005137.2 + 26512 0.69 0.830333
Target:  5'- -gACGCGGCcgAUGAcuuaaaaguGUGGCGCGCGu -3'
miRNA:   3'- cgUGCGCCGcgUAUU---------UAUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 129529 0.69 0.830333
Target:  5'- uGCugGCGa-GCAUu-GUGGCGCGCa- -3'
miRNA:   3'- -CGugCGCcgCGUAuuUAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 96493 0.69 0.838847
Target:  5'- uGCGCGUcguguccacgGGCGCuAUGAcUAGCGgCGCGc -3'
miRNA:   3'- -CGUGCG----------CCGCG-UAUUuAUCGC-GCGCu -5'
22855 3' -53.5 NC_005137.2 + 50086 0.69 0.838847
Target:  5'- cGCGCGCcuccacGGcCGCGcAAAU-GCGCGUGAg -3'
miRNA:   3'- -CGUGCG------CC-GCGUaUUUAuCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 97430 0.69 0.85286
Target:  5'- cGgGCGCGGCGCAcucaaaaacaUGucggggcacaugguAGUGGCGgCGUGAc -3'
miRNA:   3'- -CgUGCGCCGCGU----------AU--------------UUAUCGC-GCGCU- -5'
22855 3' -53.5 NC_005137.2 + 84566 0.69 0.855271
Target:  5'- aCACGuCGGCGCGUucg-GGCGgGuCGGg -3'
miRNA:   3'- cGUGC-GCCGCGUAuuuaUCGCgC-GCU- -5'
22855 3' -53.5 NC_005137.2 + 68419 0.68 0.878289
Target:  5'- uGUACGUGGCGCAcGGGUugaacgagucGGCGCaGCc- -3'
miRNA:   3'- -CGUGCGCCGCGUaUUUA----------UCGCG-CGcu -5'
22855 3' -53.5 NC_005137.2 + 35395 0.7 0.821629
Target:  5'- -gACGCGaCGCAUuugGAAUcGGCGCGCGc -3'
miRNA:   3'- cgUGCGCcGCGUA---UUUA-UCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 7177 0.71 0.765895
Target:  5'- cGCGCGCGuugcaGCGCAUuucGAAccGGCGCGUGc -3'
miRNA:   3'- -CGUGCGC-----CGCGUA---UUUa-UCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 125033 0.71 0.756109
Target:  5'- -gGCGUGGCGCAggcaacgGAGccgGGCGgCGCGGc -3'
miRNA:   3'- cgUGCGCCGCGUa------UUUa--UCGC-GCGCU- -5'
22855 3' -53.5 NC_005137.2 + 110708 0.79 0.337919
Target:  5'- uGCGCGCGuGCGCAacGGUGuGCGCGCa- -3'
miRNA:   3'- -CGUGCGC-CGCGUauUUAU-CGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 60144 0.77 0.43157
Target:  5'- uCACGCGGCaGCAUGAccauGCGCGgGAu -3'
miRNA:   3'- cGUGCGCCG-CGUAUUuau-CGCGCgCU- -5'
22855 3' -53.5 NC_005137.2 + 68672 0.76 0.488628
Target:  5'- cGCGCGUGGCggaugacaGCAUAAuaAGCGUGCGc -3'
miRNA:   3'- -CGUGCGCCG--------CGUAUUuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 98169 0.74 0.60096
Target:  5'- gGCGCGCGGC-CAcAGAUAagauaCGCGCGAg -3'
miRNA:   3'- -CGUGCGCCGcGUaUUUAUc----GCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 124961 0.74 0.60096
Target:  5'- -aACGCGGCGCcgguGAUGGgGCGCu- -3'
miRNA:   3'- cgUGCGCCGCGuau-UUAUCgCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 97990 0.74 0.605157
Target:  5'- gGCGCGCGGCGUgggugcgcccgccaaGUGGccAGCGUGCa- -3'
miRNA:   3'- -CGUGCGCCGCG---------------UAUUuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 3 0.73 0.632496
Target:  5'- aGUACGCGGgGCcaGUGAAcAGCgGCGCGu -3'
miRNA:   3'- -CGUGCGCCgCG--UAUUUaUCG-CGCGCu -5'
22855 3' -53.5 NC_005137.2 + 108152 0.71 0.746208
Target:  5'- gGCG-GCGGCgGCGUcgGUAuGCGCGCGc -3'
miRNA:   3'- -CGUgCGCCG-CGUAuuUAU-CGCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.