miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 53622 0.67 0.911962
Target:  5'- aGCAUGUGGCGCAcucguuGCaaGCGGu -3'
miRNA:   3'- -CGUGCGCCGCGUauuuauCGcgCGCU- -5'
22855 3' -53.5 NC_005137.2 + 15818 0.67 0.911962
Target:  5'- cGCACGUGGCaugccuuaaacGCAUcg--GGCGCGUu- -3'
miRNA:   3'- -CGUGCGCCG-----------CGUAuuuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 110643 0.67 0.911348
Target:  5'- cGCGcCGaCGGCGUuuggcuugugcccGUGAcgGGCGUGCGc -3'
miRNA:   3'- -CGU-GC-GCCGCG-------------UAUUuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 114413 0.68 0.905717
Target:  5'- aGC-CGCcGCGCAUcAAU-GCGCGCa- -3'
miRNA:   3'- -CGuGCGcCGCGUAuUUAuCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 26680 0.68 0.905079
Target:  5'- cGCACGUgcgaacguuugauGGCGC-UGAAcGGCG-GCGAa -3'
miRNA:   3'- -CGUGCG-------------CCGCGuAUUUaUCGCgCGCU- -5'
22855 3' -53.5 NC_005137.2 + 42070 0.68 0.899224
Target:  5'- cGCGgGCGaaacGCGCGUGuuUAGCGUGUu- -3'
miRNA:   3'- -CGUgCGC----CGCGUAUuuAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 10699 0.68 0.899224
Target:  5'- cGUuuCGUGGCGUuc-GAUGGCGUGCa- -3'
miRNA:   3'- -CGu-GCGCCGCGuauUUAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 20200 0.68 0.899224
Target:  5'- gGCGgGCGGCGUcgAuugcGAaAGCGCGUa- -3'
miRNA:   3'- -CGUgCGCCGCGuaU----UUaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 18767 0.68 0.897228
Target:  5'- aGCACGCGGaacgcCGCGUucaaucaucacuGCGCGCa- -3'
miRNA:   3'- -CGUGCGCC-----GCGUAuuuau-------CGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 49688 0.68 0.892485
Target:  5'- gGCGCGCGGCG-GUAAcUA-CGCGCc- -3'
miRNA:   3'- -CGUGCGCCGCgUAUUuAUcGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 75970 0.68 0.892485
Target:  5'- -gACGCGGCGCGcgu-UGGUGCaCGGc -3'
miRNA:   3'- cgUGCGCCGCGUauuuAUCGCGcGCU- -5'
22855 3' -53.5 NC_005137.2 + 48780 0.68 0.892485
Target:  5'- -gACGCGGCGCcgcac-AGCGUGUGc -3'
miRNA:   3'- cgUGCGCCGCGuauuuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 78614 0.68 0.888327
Target:  5'- cGCGCGcCGGCGacgAAAUGGUGUccuuuauucaauacuGCGAg -3'
miRNA:   3'- -CGUGC-GCCGCguaUUUAUCGCG---------------CGCU- -5'
22855 3' -53.5 NC_005137.2 + 45451 0.68 0.885506
Target:  5'- aGCGgGCGGCGCAgca----CGCGCa- -3'
miRNA:   3'- -CGUgCGCCGCGUauuuaucGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 51285 0.68 0.878289
Target:  5'- cGCAauuUGCGGCgggcagcgGCAUAAcgAGUGCGCc- -3'
miRNA:   3'- -CGU---GCGCCG--------CGUAUUuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 118105 0.68 0.878289
Target:  5'- cGCGUGCGGUGCAacaa-GGUGCGCa- -3'
miRNA:   3'- -CGUGCGCCGCGUauuuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 68419 0.68 0.878289
Target:  5'- uGUACGUGGCGCAcGGGUugaacgagucGGCGCaGCc- -3'
miRNA:   3'- -CGUGCGCCGCGUaUUUA----------UCGCG-CGcu -5'
22855 3' -53.5 NC_005137.2 + 40244 0.69 0.863166
Target:  5'- cCACGuCGGaUGCAUuggccguGUGGCGCGCa- -3'
miRNA:   3'- cGUGC-GCC-GCGUAuu-----UAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 32855 0.69 0.863166
Target:  5'- cGCGCGcCGGC-UAUAAAaGGCGCGgcCGAa -3'
miRNA:   3'- -CGUGC-GCCGcGUAUUUaUCGCGC--GCU- -5'
22855 3' -53.5 NC_005137.2 + 22890 0.69 0.863166
Target:  5'- -gAUGCGGUGCugcGAUcGGCGCGCa- -3'
miRNA:   3'- cgUGCGCCGCGuauUUA-UCGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.