miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 5' -63.5 NC_005137.2 + 128567 1.11 0.000475
Target:  5'- uCGUCGGGCGCGGGCACGUCGGCCACCg -3'
miRNA:   3'- -GCAGCCCGCGCCCGUGCAGCCGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 112686 0.8 0.08356
Target:  5'- gGUCGGGacgcacguuaaaCGCGGGCACGUCGuCCACg -3'
miRNA:   3'- gCAGCCC------------GCGCCCGUGCAGCcGGUGg -5'
22855 5' -63.5 NC_005137.2 + 84568 0.76 0.147751
Target:  5'- aCGUCGGcGCGUucGGGCGgGUCGGgCACg -3'
miRNA:   3'- -GCAGCC-CGCG--CCCGUgCAGCCgGUGg -5'
22855 5' -63.5 NC_005137.2 + 89394 0.74 0.206364
Target:  5'- gGUCGGGCGUauGGGCuuGUaCGG-CACCa -3'
miRNA:   3'- gCAGCCCGCG--CCCGugCA-GCCgGUGG- -5'
22855 5' -63.5 NC_005137.2 + 108146 0.73 0.231757
Target:  5'- uCGUCGGGCgGCGGcgGCGUCGGuaugcgcgcgcCCGCCc -3'
miRNA:   3'- -GCAGCCCG-CGCCcgUGCAGCC-----------GGUGG- -5'
22855 5' -63.5 NC_005137.2 + 109409 0.72 0.271671
Target:  5'- cCGUCGGGCucgucaaaaccGCGGccuauGCGCGgcccaUCGGUCACCc -3'
miRNA:   3'- -GCAGCCCG-----------CGCC-----CGUGC-----AGCCGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 67341 0.72 0.284048
Target:  5'- gCGUCGGGUucggugaccGCGGGCGCGaCGcgaugcgcgaccGUCGCCg -3'
miRNA:   3'- -GCAGCCCG---------CGCCCGUGCaGC------------CGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 87189 0.71 0.310128
Target:  5'- uCGaCGGGCGCGGGCGgcUGcUCGuGCCGUCg -3'
miRNA:   3'- -GCaGCCCGCGCCCGU--GC-AGC-CGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 80262 0.71 0.323837
Target:  5'- uGUCuGGCaacGCGGGCAUGUCGcGUUugCa -3'
miRNA:   3'- gCAGcCCG---CGCCCGUGCAGC-CGGugG- -5'
22855 5' -63.5 NC_005137.2 + 7666 0.71 0.323837
Target:  5'- uCGUCGGGCGCGGuuggcGCAgCGUCcauguGCCuuCCa -3'
miRNA:   3'- -GCAGCCCGCGCC-----CGU-GCAGc----CGGu-GG- -5'
22855 5' -63.5 NC_005137.2 + 99372 0.71 0.330859
Target:  5'- gCGUCcGcGCGCGuGCAcugacCGUUGGCCGCCa -3'
miRNA:   3'- -GCAGcC-CGCGCcCGU-----GCAGCCGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 91190 0.7 0.337274
Target:  5'- --cCGuGGCGCGGcguuugguugcacGCGUGUUGGCCGCCa -3'
miRNA:   3'- gcaGC-CCGCGCC-------------CGUGCAGCCGGUGG- -5'
22855 5' -63.5 NC_005137.2 + 73770 0.7 0.352592
Target:  5'- uCGUUuGGCGCGGGCGuagccuCGUucgccaCGGCCugCu -3'
miRNA:   3'- -GCAGcCCGCGCCCGU------GCA------GCCGGugG- -5'
22855 5' -63.5 NC_005137.2 + 102949 0.7 0.375317
Target:  5'- cCGUCuGGCGCaucccaGcGCGCGUCGcGCCACg -3'
miRNA:   3'- -GCAGcCCGCGc-----C-CGUGCAGC-CGGUGg -5'
22855 5' -63.5 NC_005137.2 + 8633 0.69 0.391008
Target:  5'- gCGgCGGGCGUGGGCGUGcuaUUGGCCGg- -3'
miRNA:   3'- -GCaGCCCGCGCCCGUGC---AGCCGGUgg -5'
22855 5' -63.5 NC_005137.2 + 75014 0.69 0.399012
Target:  5'- -aUCGaGCGgGGuGC-CGUCGGCCACg -3'
miRNA:   3'- gcAGCcCGCgCC-CGuGCAGCCGGUGg -5'
22855 5' -63.5 NC_005137.2 + 20449 0.69 0.423642
Target:  5'- aCG-CaGGUGCGGGCGCacaUCGGCgggCACCu -3'
miRNA:   3'- -GCaGcCCGCGCCCGUGc--AGCCG---GUGG- -5'
22855 5' -63.5 NC_005137.2 + 98030 0.69 0.426155
Target:  5'- aCGUCGGGCgcugcgaGCGGGUccagcagcgccuuucGCGcaaaGGCCGCa -3'
miRNA:   3'- -GCAGCCCG-------CGCCCG---------------UGCag--CCGGUGg -5'
22855 5' -63.5 NC_005137.2 + 36037 0.68 0.448297
Target:  5'- --aCGGGCGCGGGCguuaaaaGCGUUGuuGCaUACCc -3'
miRNA:   3'- gcaGCCCGCGCCCG-------UGCAGC--CG-GUGG- -5'
22855 5' -63.5 NC_005137.2 + 97987 0.68 0.457854
Target:  5'- --aCGGGCGCGcGGCGUGggugCGcCCGCCa -3'
miRNA:   3'- gcaGCCCGCGC-CCGUGCa---GCcGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.