miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22857 3' -51.8 NC_005137.2 + 71319 0.66 0.983735
Target:  5'- aCGGcCACgUAGCAACAUGAUaaGACa- -3'
miRNA:   3'- gGCC-GUG-GUCGUUGUACUGagUUGac -5'
22857 3' -51.8 NC_005137.2 + 30804 0.66 0.982539
Target:  5'- aCGcGCACCAGCAACAcguuggGAgUgugcgcguuuaauacCAACUGa -3'
miRNA:   3'- gGC-CGUGGUCGUUGUa-----CUgA---------------GUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 26561 0.66 0.977085
Target:  5'- gUGGCGCU-GCGGCGUG--UCGACUGc -3'
miRNA:   3'- gGCCGUGGuCGUUGUACugAGUUGAC- -5'
22857 3' -51.8 NC_005137.2 + 78073 0.66 0.974477
Target:  5'- gCCGGCACCGGCcACuUGuuUCAu--- -3'
miRNA:   3'- -GGCCGUGGUCGuUGuACugAGUugac -5'
22857 3' -51.8 NC_005137.2 + 32199 0.66 0.971659
Target:  5'- gUCGGCGCaCGGCGGCGuuUGGCagaCGACa- -3'
miRNA:   3'- -GGCCGUG-GUCGUUGU--ACUGa--GUUGac -5'
22857 3' -51.8 NC_005137.2 + 49331 0.67 0.968624
Target:  5'- cCCGaCACCGGCAGC--GAUUCGGCc- -3'
miRNA:   3'- -GGCcGUGGUCGUUGuaCUGAGUUGac -5'
22857 3' -51.8 NC_005137.2 + 68005 0.67 0.968624
Target:  5'- gCCGGCGCC-GCAcCAUGGgUCcGCc- -3'
miRNA:   3'- -GGCCGUGGuCGUuGUACUgAGuUGac -5'
22857 3' -51.8 NC_005137.2 + 90711 0.67 0.968309
Target:  5'- gCUGGUggugcguGCCAGCAACGUGAUgauucacgUUAACa- -3'
miRNA:   3'- -GGCCG-------UGGUCGUUGUACUG--------AGUUGac -5'
22857 3' -51.8 NC_005137.2 + 69435 0.67 0.961875
Target:  5'- gCUGGCGgCGGCAauuauuaucauuACGUG-CUCAACg- -3'
miRNA:   3'- -GGCCGUgGUCGU------------UGUACuGAGUUGac -5'
22857 3' -51.8 NC_005137.2 + 124964 0.67 0.958148
Target:  5'- gCGGCGCCGGUGAUggGGCgcugcGCUGc -3'
miRNA:   3'- gGCCGUGGUCGUUGuaCUGagu--UGAC- -5'
22857 3' -51.8 NC_005137.2 + 125017 0.67 0.958148
Target:  5'- aCCGGCgAUCGguuGCGGCGUGGCgcaggCAACg- -3'
miRNA:   3'- -GGCCG-UGGU---CGUUGUACUGa----GUUGac -5'
22857 3' -51.8 NC_005137.2 + 59315 0.67 0.958148
Target:  5'- gCGGCACCAGCAccucGAUcCGGCUa -3'
miRNA:   3'- gGCCGUGGUCGUuguaCUGaGUUGAc -5'
22857 3' -51.8 NC_005137.2 + 115270 0.67 0.958148
Target:  5'- gCUGGCGCC-GCGACcuUGGCgagCAGCg- -3'
miRNA:   3'- -GGCCGUGGuCGUUGu-ACUGa--GUUGac -5'
22857 3' -51.8 NC_005137.2 + 121542 0.67 0.954179
Target:  5'- aCCGGCGCgaaAGCAccACGUGgcacaauaauuuGCUCAaaauGCUGg -3'
miRNA:   3'- -GGCCGUGg--UCGU--UGUAC------------UGAGU----UGAC- -5'
22857 3' -51.8 NC_005137.2 + 20575 0.68 0.949964
Target:  5'- aCCGaGgACCucGCGACAUGACcgUCGACg- -3'
miRNA:   3'- -GGC-CgUGGu-CGUUGUACUG--AGUUGac -5'
22857 3' -51.8 NC_005137.2 + 5958 0.68 0.940777
Target:  5'- uCCGGCGCCGcGCcGCccGGCUCcgUUGc -3'
miRNA:   3'- -GGCCGUGGU-CGuUGuaCUGAGuuGAC- -5'
22857 3' -51.8 NC_005137.2 + 32335 0.68 0.940777
Target:  5'- gUGGC-CCAGCAGCAcGA-UCAGCUc -3'
miRNA:   3'- gGCCGuGGUCGUUGUaCUgAGUUGAc -5'
22857 3' -51.8 NC_005137.2 + 31228 0.68 0.93931
Target:  5'- gCGGCacACCAGCuugAACAUGgccgcgucgugcgcGCUCAACUc -3'
miRNA:   3'- gGCCG--UGGUCG---UUGUAC--------------UGAGUUGAc -5'
22857 3' -51.8 NC_005137.2 + 15751 0.68 0.9358
Target:  5'- gCGGCGCCAGCGucgcCAUGugUucguCGACc- -3'
miRNA:   3'- gGCCGUGGUCGUu---GUACugA----GUUGac -5'
22857 3' -51.8 NC_005137.2 + 7364 0.69 0.925071
Target:  5'- gCUGGUGCCGGCAaaauaGCGUGGgucUUCAGCg- -3'
miRNA:   3'- -GGCCGUGGUCGU-----UGUACU---GAGUUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.