miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 128534 0.68 0.963536
Target:  5'- -cACGCGGCgcAUAaauaGCGCGCGAu--- -3'
miRNA:   3'- cuUGCGCCGa-UAUg---CGUGCGCUuugc -5'
22868 3' -51.4 NC_005137.2 + 124959 0.68 0.956083
Target:  5'- uGAACGCGGCgccgGUGaugggGCGCuGCGcuGCGu -3'
miRNA:   3'- -CUUGCGCCGa---UAUg----CGUG-CGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 122617 0.67 0.978208
Target:  5'- -uGCGUGGCacaucguUACuGCGCGUGAuGCGg -3'
miRNA:   3'- cuUGCGCCGau-----AUG-CGUGCGCUuUGC- -5'
22868 3' -51.4 NC_005137.2 + 120288 0.66 0.987824
Target:  5'- cGACGCGuGCgcgAUGCgguGCACGCcaucgaacgccacGAAACGg -3'
miRNA:   3'- cUUGCGC-CGa--UAUG---CGUGCG-------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 114258 0.69 0.943067
Target:  5'- cGGACuuGGCggguCGCACGgGGAACGu -3'
miRNA:   3'- -CUUGcgCCGauauGCGUGCgCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 112865 0.66 0.987979
Target:  5'- --cUGCGGCUcgguccaaGUGauaGCACGCGGGcuGCGc -3'
miRNA:   3'- cuuGCGCCGA--------UAUg--CGUGCGCUU--UGC- -5'
22868 3' -51.4 NC_005137.2 + 110037 0.7 0.903767
Target:  5'- aAGCGCGGCaaaACGCGCGcCGcAGGCa -3'
miRNA:   3'- cUUGCGCCGauaUGCGUGC-GC-UUUGc -5'
22868 3' -51.4 NC_005137.2 + 108627 0.67 0.972985
Target:  5'- uGGugGCGGUgacgGUGC-CACGCGAc--- -3'
miRNA:   3'- -CUugCGCCGa---UAUGcGUGCGCUuugc -5'
22868 3' -51.4 NC_005137.2 + 108546 0.66 0.986365
Target:  5'- uGAGCGCGGUgca--GC-CGaCGGAGCGc -3'
miRNA:   3'- -CUUGCGCCGauaugCGuGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 108150 0.68 0.959929
Target:  5'- cGGGCgGCGGCggcgucgGUAUGCGCGCGcccGCc -3'
miRNA:   3'- -CUUG-CGCCGa------UAUGCGUGCGCuu-UGc -5'
22868 3' -51.4 NC_005137.2 + 107002 0.7 0.91628
Target:  5'- cAACGUGGUUGcgcaaacgcUGCGCA-GCGAAAUGa -3'
miRNA:   3'- cUUGCGCCGAU---------AUGCGUgCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 101149 0.7 0.90048
Target:  5'- aAGCGCGGCguugagaaGCGCGCGAcccuuuuuuagcgcGGCGg -3'
miRNA:   3'- cUUGCGCCGauaug---CGUGCGCU--------------UUGC- -5'
22868 3' -51.4 NC_005137.2 + 100036 0.68 0.947656
Target:  5'- -cACGCGGUccgACGCGgCGCGcgGCGc -3'
miRNA:   3'- cuUGCGCCGauaUGCGU-GCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 99274 1.1 0.00642
Target:  5'- uGAACGCGGCUAUACGCACGCGAAACGa -3'
miRNA:   3'- -CUUGCGCCGAUAUGCGUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 97992 0.67 0.978208
Target:  5'- -cGCGCGGCguggGUGCGCcCGCcAAGUGg -3'
miRNA:   3'- cuUGCGCCGa---UAUGCGuGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 97646 0.67 0.972985
Target:  5'- uGAAUGCGGCUcUGCGCuuGCa----- -3'
miRNA:   3'- -CUUGCGCCGAuAUGCGugCGcuuugc -5'
22868 3' -51.4 NC_005137.2 + 97469 0.67 0.978208
Target:  5'- aGugGCGGCgugACGCuCGCGcAggUGg -3'
miRNA:   3'- cUugCGCCGauaUGCGuGCGC-UuuGC- -5'
22868 3' -51.4 NC_005137.2 + 96421 0.7 0.903767
Target:  5'- -cGCGCGGCg--ACGCGCccgccGCGuuGCGu -3'
miRNA:   3'- cuUGCGCCGauaUGCGUG-----CGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 95766 0.66 0.982646
Target:  5'- cAGCG-GGCgu--CGCACGuCGGGACGu -3'
miRNA:   3'- cUUGCgCCGauauGCGUGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 95510 0.67 0.972985
Target:  5'- aGACGUGGUgGUGCuggGCACGCGcaaaaugccguuGAGCGa -3'
miRNA:   3'- cUUGCGCCGaUAUG---CGUGCGC------------UUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.