miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 3' -49.5 NC_005137.2 + 98070 1.07 0.011399
Target:  5'- cAAACGACACAGCAACCAAAGCACGUCc -3'
miRNA:   3'- -UUUGCUGUGUCGUUGGUUUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 22349 0.78 0.552203
Target:  5'- uGGCGACACaAGCAAUgGGuGCACGUCg -3'
miRNA:   3'- uUUGCUGUG-UCGUUGgUUuCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 70109 0.74 0.768175
Target:  5'- --cCGuUugGGCAACCAcGAGCGCGUCg -3'
miRNA:   3'- uuuGCuGugUCGUUGGU-UUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 100135 0.73 0.8075
Target:  5'- gAAGCGGCACAGCucgcCCAcguacGGGCGCGcCg -3'
miRNA:   3'- -UUUGCUGUGUCGuu--GGU-----UUCGUGCaG- -5'
22870 3' -49.5 NC_005137.2 + 43811 0.73 0.835102
Target:  5'- cGACGGCACgAGCAGCCGcccGCGCccGUCg -3'
miRNA:   3'- uUUGCUGUG-UCGUUGGUuu-CGUG--CAG- -5'
22870 3' -49.5 NC_005137.2 + 87331 0.73 0.835102
Target:  5'- gAAACGGCGCAGCuGGCCAAccGCAUGg- -3'
miRNA:   3'- -UUUGCUGUGUCG-UUGGUUu-CGUGCag -5'
22870 3' -49.5 NC_005137.2 + 16068 0.73 0.835102
Target:  5'- cAAACGACGCAGUuuaaAACUAaacaugauuuaGAGCACGUg -3'
miRNA:   3'- -UUUGCUGUGUCG----UUGGU-----------UUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 21850 0.73 0.843889
Target:  5'- aGAAC-ACugGGCAACUuGAGCACGUa -3'
miRNA:   3'- -UUUGcUGugUCGUUGGuUUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 56151 0.72 0.852452
Target:  5'- --cCGACGCAGCGACC---GCACGa- -3'
miRNA:   3'- uuuGCUGUGUCGUUGGuuuCGUGCag -5'
22870 3' -49.5 NC_005137.2 + 67516 0.72 0.876727
Target:  5'- --cCGACAC-GUGGCC-GAGCACGUCc -3'
miRNA:   3'- uuuGCUGUGuCGUUGGuUUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 98500 0.72 0.884323
Target:  5'- --cCGACGCAG-AACCGAGGCGCa-- -3'
miRNA:   3'- uuuGCUGUGUCgUUGGUUUCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 115136 0.71 0.905538
Target:  5'- cGGGCGGCAC-GUGACCGGcGGCACuGUCg -3'
miRNA:   3'- -UUUGCUGUGuCGUUGGUU-UCGUG-CAG- -5'
22870 3' -49.5 NC_005137.2 + 32889 0.71 0.912072
Target:  5'- cGACGACGCGGUAGCCGGcGGCG-GUg -3'
miRNA:   3'- uUUGCUGUGUCGUUGGUU-UCGUgCAg -5'
22870 3' -49.5 NC_005137.2 + 53841 0.7 0.924317
Target:  5'- uAAACGAaGCAuuaguuGCAGCCAAAGCACa-- -3'
miRNA:   3'- -UUUGCUgUGU------CGUUGGUUUCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 122724 0.7 0.935456
Target:  5'- -cGCGuGCugGGCGugCuuAGCACGUUa -3'
miRNA:   3'- uuUGC-UGugUCGUugGuuUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 50227 0.7 0.940612
Target:  5'- cAAACucGCGCAGCAGCUcgGGguCGUCg -3'
miRNA:   3'- -UUUGc-UGUGUCGUUGGuuUCguGCAG- -5'
22870 3' -49.5 NC_005137.2 + 31808 0.7 0.940612
Target:  5'- cAGCGAUGCGGCGGcCCAAuGcCGCGUUa -3'
miRNA:   3'- uUUGCUGUGUCGUU-GGUUuC-GUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 108546 0.69 0.950105
Target:  5'- uGAGCG-CGguGCAGCCGAcggagcGCACGUUg -3'
miRNA:   3'- -UUUGCuGUguCGUUGGUUu-----CGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 58667 0.69 0.950105
Target:  5'- gGAGCGGCGCAGCucGCgCAAuuCGCGUUc -3'
miRNA:   3'- -UUUGCUGUGUCGu-UG-GUUucGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 8863 0.69 0.950105
Target:  5'- cAACGACACGGCAcaacuaCAAAGCAUa-- -3'
miRNA:   3'- uUUGCUGUGUCGUug----GUUUCGUGcag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.