miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 5' -61.7 NC_005137.2 + 78795 0.66 0.636168
Target:  5'- aUACgUGCCGUuugcggagCGGgaGCgGCGUCGUCg -3'
miRNA:   3'- aGUG-GCGGCG--------GCCgaUGgCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 110452 0.67 0.557496
Target:  5'- aCACCGCgGCCGGCgcguacACgGgGUCa-- -3'
miRNA:   3'- aGUGGCGgCGGCCGa-----UGgCgCAGcag -5'
22870 5' -61.7 NC_005137.2 + 39221 0.67 0.571127
Target:  5'- uUUGCCGCUGgUGGCcaaauacguuuccagUACCGCGUUcaaGUCg -3'
miRNA:   3'- -AGUGGCGGCgGCCG---------------AUGGCGCAG---CAG- -5'
22870 5' -61.7 NC_005137.2 + 98352 0.67 0.586802
Target:  5'- gUCACCGUcacgcuugugCGCCGGUU-UgGCGcCGUCg -3'
miRNA:   3'- -AGUGGCG----------GCGGCCGAuGgCGCaGCAG- -5'
22870 5' -61.7 NC_005137.2 + 95878 0.66 0.606502
Target:  5'- aCACCGCCGacaCGGgcaUGgUGCGUCG-Cg -3'
miRNA:   3'- aGUGGCGGCg--GCCg--AUgGCGCAGCaG- -5'
22870 5' -61.7 NC_005137.2 + 114782 0.66 0.616382
Target:  5'- -aACUGCCagguuuguugGgCGGCUugCGCacGUCGUCg -3'
miRNA:   3'- agUGGCGG----------CgGCCGAugGCG--CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 70704 0.66 0.626273
Target:  5'- gCGCUGCCGaguuaaCGGCUugCGCuUCuUCa -3'
miRNA:   3'- aGUGGCGGCg-----GCCGAugGCGcAGcAG- -5'
22870 5' -61.7 NC_005137.2 + 90552 0.66 0.626273
Target:  5'- -gAUCGCCGUCacuuuGGCUuguuacggcGCCGUaGUCGUCa -3'
miRNA:   3'- agUGGCGGCGG-----CCGA---------UGGCG-CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 28255 0.66 0.626273
Target:  5'- aUACuCGCaCGCC----ACCGCGUCGUCu -3'
miRNA:   3'- aGUG-GCG-GCGGccgaUGGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 70015 0.67 0.557496
Target:  5'- aUCAcCCGCCGgcaaucccaCGGC-ACCGCGUaCGUg -3'
miRNA:   3'- -AGU-GGCGGCg--------GCCGaUGGCGCA-GCAg -5'
22870 5' -61.7 NC_005137.2 + 31683 0.67 0.551683
Target:  5'- aCACCGCCGCgUGGUUgugcggucgcACCgacgugugcacguucGCGUCGUUu -3'
miRNA:   3'- aGUGGCGGCG-GCCGA----------UGG---------------CGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 48227 0.67 0.547817
Target:  5'- aUCACCGUUuCCGuuGCUGCCGcCGUuacCGUCg -3'
miRNA:   3'- -AGUGGCGGcGGC--CGAUGGC-GCA---GCAG- -5'
22870 5' -61.7 NC_005137.2 + 80166 0.71 0.333103
Target:  5'- aCGuuGCCGCC-GUUugCGCGUUGUUa -3'
miRNA:   3'- aGUggCGGCGGcCGAugGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 96043 0.71 0.370885
Target:  5'- cCACCGCCGCCcaacuuagcgacGaacGCUACCGCGUUa-- -3'
miRNA:   3'- aGUGGCGGCGG------------C---CGAUGGCGCAGcag -5'
22870 5' -61.7 NC_005137.2 + 1500 0.7 0.386795
Target:  5'- aCAuuCCGCCGCgCGGCgccgaCGCGUUGUUc -3'
miRNA:   3'- aGU--GGCGGCG-GCCGaug--GCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 87970 0.7 0.411488
Target:  5'- gUCGCCGuCCGUgGGCga-CGCGUgGUUg -3'
miRNA:   3'- -AGUGGC-GGCGgCCGaugGCGCAgCAG- -5'
22870 5' -61.7 NC_005137.2 + 19265 0.7 0.428483
Target:  5'- aCACCGuuGCCGuGUUGCCGUGcUCu-- -3'
miRNA:   3'- aGUGGCggCGGC-CGAUGGCGC-AGcag -5'
22870 5' -61.7 NC_005137.2 + 63633 0.69 0.437135
Target:  5'- aCGCCGCCG-CGGCgacggucgcgcAUCGCGUCG-Cg -3'
miRNA:   3'- aGUGGCGGCgGCCGa----------UGGCGCAGCaG- -5'
22870 5' -61.7 NC_005137.2 + 108673 0.69 0.463675
Target:  5'- -aGCUGCCGCCgaGGgaGCCGCGUuUGUg -3'
miRNA:   3'- agUGGCGGCGG--CCgaUGGCGCA-GCAg -5'
22870 5' -61.7 NC_005137.2 + 93278 0.69 0.479084
Target:  5'- -gGCCaGCCGCCGGUUuuugcuaccuugaaACgGCGUgaCGUCa -3'
miRNA:   3'- agUGG-CGGCGGCCGA--------------UGgCGCA--GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.