miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22881 5' -57.3 NC_005137.2 + 84361 0.66 0.854985
Target:  5'- -----cGGCGcugcccuuaGCGCCGCUGUCCaCCa -3'
miRNA:   3'- cuuagaCCGCug-------CGUGGUGGCAGG-GG- -5'
22881 5' -57.3 NC_005137.2 + 107857 0.66 0.839099
Target:  5'- cAAUCUGGCguuccgucaugGACGaUugCACCG-CCUCg -3'
miRNA:   3'- cUUAGACCG-----------CUGC-GugGUGGCaGGGG- -5'
22881 5' -57.3 NC_005137.2 + 95690 0.66 0.839099
Target:  5'- uAAUCgcgUGGUGACGCccACCACCG-CaCCg -3'
miRNA:   3'- cUUAG---ACCGCUGCG--UGGUGGCaGgGG- -5'
22881 5' -57.3 NC_005137.2 + 99236 0.66 0.830873
Target:  5'- uGAUUguuuugGGCG-CGCGCC-CCGUUgCCa -3'
miRNA:   3'- cUUAGa-----CCGCuGCGUGGuGGCAGgGG- -5'
22881 5' -57.3 NC_005137.2 + 8465 0.67 0.813893
Target:  5'- cAAUU--GCGACGCGCCGauaaCGUgCCCg -3'
miRNA:   3'- cUUAGacCGCUGCGUGGUg---GCAgGGG- -5'
22881 5' -57.3 NC_005137.2 + 33013 0.67 0.805155
Target:  5'- ---cUUGGCgGGCGCACCcacGCCGcgCgCCCg -3'
miRNA:   3'- cuuaGACCG-CUGCGUGG---UGGCa-G-GGG- -5'
22881 5' -57.3 NC_005137.2 + 88468 0.67 0.796261
Target:  5'- uGAGaCUGGCG-CGguUCACCGUCgCg -3'
miRNA:   3'- -CUUaGACCGCuGCguGGUGGCAGgGg -5'
22881 5' -57.3 NC_005137.2 + 130187 0.67 0.78722
Target:  5'- ---cCUGGUGuaaACGUGCCGCCG-CCaCCu -3'
miRNA:   3'- cuuaGACCGC---UGCGUGGUGGCaGG-GG- -5'
22881 5' -57.3 NC_005137.2 + 88601 0.67 0.78722
Target:  5'- -uGUCccGGCGGgGCACCGCCGaagCUCa -3'
miRNA:   3'- cuUAGa-CCGCUgCGUGGUGGCa--GGGg -5'
22881 5' -57.3 NC_005137.2 + 49882 0.67 0.768734
Target:  5'- aGGUCuUGGCGGCGCAaCAgUGUUCCa -3'
miRNA:   3'- cUUAG-ACCGCUGCGUgGUgGCAGGGg -5'
22881 5' -57.3 NC_005137.2 + 67361 0.69 0.700718
Target:  5'- gGGcgCgacGCGAUGCGCgACCGUCgCCg -3'
miRNA:   3'- -CUuaGac-CGCUGCGUGgUGGCAGgGG- -5'
22881 5' -57.3 NC_005137.2 + 72801 0.7 0.599392
Target:  5'- ---gUUGGCGGCGCgcGCUGCCGUCUUg -3'
miRNA:   3'- cuuaGACCGCUGCG--UGGUGGCAGGGg -5'
22881 5' -57.3 NC_005137.2 + 5955 0.72 0.481241
Target:  5'- aGAUCcGGCGcCGCGCCGCCcggCUCCg -3'
miRNA:   3'- cUUAGaCCGCuGCGUGGUGGca-GGGG- -5'
22881 5' -57.3 NC_005137.2 + 37543 0.74 0.417688
Target:  5'- cGGcgCUGGCG-CGCACCGugcCCGuaugcaUCCCCg -3'
miRNA:   3'- -CUuaGACCGCuGCGUGGU---GGC------AGGGG- -5'
22881 5' -57.3 NC_005137.2 + 130984 0.74 0.399639
Target:  5'- gGAGUUUGcGCcuGACGCGCCGCUGUucacuggCCCCg -3'
miRNA:   3'- -CUUAGAC-CG--CUGCGUGGUGGCA-------GGGG- -5'
22881 5' -57.3 NC_005137.2 + 68065 1.1 0.001574
Target:  5'- aGAAUCUGGCGACGCACCACCGUCCCCc -3'
miRNA:   3'- -CUUAGACCGCUGCGUGGUGGCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.