miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 105835 0.66 0.958375
Target:  5'- cGGCAgaaccucCGCGUGCUccagacacggagGCGUGCGAguugGCCg -3'
miRNA:   3'- cCUGUaa-----GCGCGUGG------------CGCACGCU----UGG- -5'
22883 5' -54.1 NC_005137.2 + 95908 0.66 0.95455
Target:  5'- -cGCGUUUGCGCcaaacaGCCGCGUGUa---- -3'
miRNA:   3'- ccUGUAAGCGCG------UGGCGCACGcuugg -5'
22883 5' -54.1 NC_005137.2 + 48879 0.66 0.95455
Target:  5'- uGGaACAUguacUGCGCCGCGcUGCGGcuucGCCu -3'
miRNA:   3'- -CC-UGUAagc-GCGUGGCGC-ACGCU----UGG- -5'
22883 5' -54.1 NC_005137.2 + 18604 0.66 0.95455
Target:  5'- -cACAaUgGCGCGCCGUGcGCGAucGCg -3'
miRNA:   3'- ccUGUaAgCGCGUGGCGCaCGCU--UGg -5'
22883 5' -54.1 NC_005137.2 + 50760 0.66 0.953358
Target:  5'- cGGCGUUCGCGCcgucaucaaacgcaACCGCGc---AGCCg -3'
miRNA:   3'- cCUGUAAGCGCG--------------UGGCGCacgcUUGG- -5'
22883 5' -54.1 NC_005137.2 + 10706 0.66 0.950495
Target:  5'- uGGCGUUCGauggcgugcacCGCAUCGCGcacGCGucgGCCa -3'
miRNA:   3'- cCUGUAAGC-----------GCGUGGCGCa--CGCu--UGG- -5'
22883 5' -54.1 NC_005137.2 + 1846 0.66 0.950495
Target:  5'- cGACGa--GUGCACCGuCGUcGCGGcGCCu -3'
miRNA:   3'- cCUGUaagCGCGUGGC-GCA-CGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 58671 0.66 0.950495
Target:  5'- cGGcGCAgcUCGCGCAauUCGCGUuCGGACa -3'
miRNA:   3'- -CC-UGUa-AGCGCGU--GGCGCAcGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 20432 0.66 0.946204
Target:  5'- aGGAUGggCGCGCcaagaCGCagGUGCGGGCg -3'
miRNA:   3'- -CCUGUaaGCGCGug---GCG--CACGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 117568 0.66 0.946204
Target:  5'- cGGCAaa-GUGCGCCGCcgGUGCG-GCUg -3'
miRNA:   3'- cCUGUaagCGCGUGGCG--CACGCuUGG- -5'
22883 5' -54.1 NC_005137.2 + 63940 0.66 0.946204
Target:  5'- aGAUgAUUUGCGCACCGUGUugacGCGcuuGCa -3'
miRNA:   3'- cCUG-UAAGCGCGUGGCGCA----CGCu--UGg -5'
22883 5' -54.1 NC_005137.2 + 93465 0.66 0.941676
Target:  5'- cGGGCAcggUGCGCGCCaGCGccGUuuGCCg -3'
miRNA:   3'- -CCUGUaa-GCGCGUGG-CGCa-CGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 21584 0.66 0.941676
Target:  5'- uGGGC---CGCGCauagGCCGCGguuuUGaCGAGCCc -3'
miRNA:   3'- -CCUGuaaGCGCG----UGGCGC----AC-GCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 98438 0.67 0.936908
Target:  5'- uGGCGguuaaaGCGCaagcaGCCGCGUGCacGGCCg -3'
miRNA:   3'- cCUGUaag---CGCG-----UGGCGCACGc-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 5884 0.67 0.936908
Target:  5'- aGACGUUCGaGCGgCGCG-GCccGCCg -3'
miRNA:   3'- cCUGUAAGCgCGUgGCGCaCGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 35407 0.67 0.936908
Target:  5'- -aGCAcgUCGCGCACaGUGcGCGGGCg -3'
miRNA:   3'- ccUGUa-AGCGCGUGgCGCaCGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 70440 0.67 0.936908
Target:  5'- uGGCgGUUCGgGCACacguuugaGCGuUGCGAGCa -3'
miRNA:   3'- cCUG-UAAGCgCGUGg-------CGC-ACGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 112658 0.67 0.936418
Target:  5'- cGACAaaUUCGCGCACUGcCGUcucguagauuuugGCGu-CCg -3'
miRNA:   3'- cCUGU--AAGCGCGUGGC-GCA-------------CGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 11145 0.67 0.931899
Target:  5'- -aACGUUUGUugGCugCGCGUGCc-ACCa -3'
miRNA:   3'- ccUGUAAGCG--CGugGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 38657 0.67 0.931899
Target:  5'- uGGGCAggCGCGCGuuGCG-GCa---- -3'
miRNA:   3'- -CCUGUaaGCGCGUggCGCaCGcuugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.