miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22892 5' -52.5 NC_005137.2 + 55298 0.66 0.965886
Target:  5'- cCGCGUcGCaAGCcguuUCGuuuACUGGAUGGCAg -3'
miRNA:   3'- -GUGCA-CG-UCGuu--AGC---UGACUUGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 125057 0.66 0.965886
Target:  5'- gGCGgcGCGGCGccgGAuCUGAACGGCGc -3'
miRNA:   3'- gUGCa-CGUCGUuagCU-GACUUGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 48895 0.66 0.962435
Target:  5'- cCGCGcUGCGGCu-UCGcCUGAG-GGCAc -3'
miRNA:   3'- -GUGC-ACGUCGuuAGCuGACUUgCCGU- -5'
22892 5' -52.5 NC_005137.2 + 106679 0.66 0.962435
Target:  5'- gGCGUGCAGU-GUUGugUGcGCGGaCGc -3'
miRNA:   3'- gUGCACGUCGuUAGCugACuUGCC-GU- -5'
22892 5' -52.5 NC_005137.2 + 63435 0.67 0.954821
Target:  5'- aACGauUGCAGguGUUGACUGAAUauGCAa -3'
miRNA:   3'- gUGC--ACGUCguUAGCUGACUUGc-CGU- -5'
22892 5' -52.5 NC_005137.2 + 26563 0.68 0.905523
Target:  5'- gGCGcUGCGGCGuGUCGACUGccaagauguacacGCGGCu -3'
miRNA:   3'- gUGC-ACGUCGU-UAGCUGACu------------UGCCGu -5'
22892 5' -52.5 NC_005137.2 + 21476 0.69 0.880679
Target:  5'- gUugGUGCAGCA--CGAC-GAGCaGCAa -3'
miRNA:   3'- -GugCACGUCGUuaGCUGaCUUGcCGU- -5'
22892 5' -52.5 NC_005137.2 + 20870 0.7 0.857603
Target:  5'- gCACGcauuaaaauUGCGGCuuUUGAcCUGGAUGGCAc -3'
miRNA:   3'- -GUGC---------ACGUCGuuAGCU-GACUUGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 34606 0.7 0.857603
Target:  5'- gCGCGgGUAGCGGUCGGC---GCGGCu -3'
miRNA:   3'- -GUGCaCGUCGUUAGCUGacuUGCCGu -5'
22892 5' -52.5 NC_005137.2 + 119787 0.7 0.849461
Target:  5'- aACGUGUuuuaucGGCGA-CGGCcgGAGCGGCGc -3'
miRNA:   3'- gUGCACG------UCGUUaGCUGa-CUUGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 103601 0.7 0.841105
Target:  5'- aGCGcUGCAGCGGccgcuacuuUUGGCcGGACGGCGu -3'
miRNA:   3'- gUGC-ACGUCGUU---------AGCUGaCUUGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 26681 0.7 0.832544
Target:  5'- gCACGUGCGaacGUuuGAUgGcGCUGAACGGCGg -3'
miRNA:   3'- -GUGCACGU---CG--UUAgC-UGACUUGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 93575 0.71 0.786958
Target:  5'- gCGCG-GCGGCAAUCacGCUGAuccaaacgcGCGGCGc -3'
miRNA:   3'- -GUGCaCGUCGUUAGc-UGACU---------UGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 114447 0.72 0.767601
Target:  5'- aCACGuUGCGGUAA-CGAUUGAGCuGCAc -3'
miRNA:   3'- -GUGC-ACGUCGUUaGCUGACUUGcCGU- -5'
22892 5' -52.5 NC_005137.2 + 87172 0.72 0.767601
Target:  5'- gCACGUGCAaaucGCGuUCGACgggcgcGGGCGGCu -3'
miRNA:   3'- -GUGCACGU----CGUuAGCUGa-----CUUGCCGu -5'
22892 5' -52.5 NC_005137.2 + 112223 0.73 0.664645
Target:  5'- aACGUGCGcGCAGUgaUGAUUGAacGCGGCGu -3'
miRNA:   3'- gUGCACGU-CGUUA--GCUGACU--UGCCGU- -5'
22892 5' -52.5 NC_005137.2 + 45534 1.09 0.005151
Target:  5'- uCACGUGCAGCAAUCGACUGAACGGCAa -3'
miRNA:   3'- -GUGCACGUCGUUAGCUGACUUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.