miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22893 5' -50.2 NC_005137.2 + 93184 0.66 0.990758
Target:  5'- -cGUCGG-UUGUGGCGUGCAGUCGa- -3'
miRNA:   3'- uuCAGUUaAACACUGCGCGUUGGCca -5'
22893 5' -50.2 NC_005137.2 + 125353 0.66 0.989404
Target:  5'- aAGGUCAAUUUGUuuacGCGCGCAugUa-- -3'
miRNA:   3'- -UUCAGUUAAACAc---UGCGCGUugGcca -5'
22893 5' -50.2 NC_005137.2 + 81580 0.66 0.987899
Target:  5'- cGGGUCAAaucuUGACGCGUGACgCGGc -3'
miRNA:   3'- -UUCAGUUaaacACUGCGCGUUG-GCCa -5'
22893 5' -50.2 NC_005137.2 + 28717 0.68 0.969275
Target:  5'- uGGUgCAGUUUGaaaGGCGCGCAuuuGCUGGa -3'
miRNA:   3'- uUCA-GUUAAACa--CUGCGCGU---UGGCCa -5'
22893 5' -50.2 NC_005137.2 + 119615 0.68 0.969275
Target:  5'- -uGcCAAUUUG-GcCGCGCAACUGGa -3'
miRNA:   3'- uuCaGUUAAACaCuGCGCGUUGGCCa -5'
22893 5' -50.2 NC_005137.2 + 123059 0.7 0.912877
Target:  5'- cGGUCGAg--GUcgcGGCGCGCAGCCuuGGUg -3'
miRNA:   3'- uUCAGUUaaaCA---CUGCGCGUUGG--CCA- -5'
22893 5' -50.2 NC_005137.2 + 43065 1.05 0.014379
Target:  5'- uAAGUCAAUUUGUGACGCGCAACCGGUc -3'
miRNA:   3'- -UUCAGUUAAACACUGCGCGUUGGCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.